EFV56045 (Trichinella spiralis)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 EFV56045 T302359_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GA30480
M02409_2.00 		Drosophila pseudoobscura
RAGATCAM
KTGATCTY		 PBM
Weirauch et al.(2014)
pTH5877 		0.978 0.886
Hr51
M06432_2.00 		Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT		 B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012 		0.978 0.886
NR2E3
M00373_2.00 		Homo sapiens
NRAGATCAMN
NKTGATCTYN		 PBM
Barrera et al.(2016)
NR2E3_REF 		0.975 0.800
Nr2e3
M02708_2.00 		Mus musculus
AAGCTTD
HAAGCTT		 SELEX
Mathelier et al.(2014)
MA0164.1 		0.975 0.800
Nr2e3
M09328_2.00 		Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN		 Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C 		0.975 0.800
NR2E3
M00372_2.00 		Homo sapiens
AAAGATCA
TGATCTTT		 PBM
Barrera et al.(2016)
NR2E3_R77Q 		0.975 0.786
NR2E3
M00370_2.00 		Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN		 PBM
Barrera et al.(2016)
NR2E3_R76Q 		0.971 0.786
NR2E3
M00371_2.00 		Homo sapiens
NNNHAATWTRTNN
NNAYAWATTDNNN		 PBM
Barrera et al.(2016)
NR2E3_R76W 		0.966 0.786
NR2E3
M00369_2.00 		Homo sapiens
NGGGRTCAHN
NDTGAYCCCN		 PBM
Barrera et al.(2016)
NR2E3_G56R 		0.960 0.786
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFV56045 Nuclear receptor 127 197

Links

Other Nuclear receptor family TFs
Other Trichinella spiralis TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31501 Aegilops tauschii F775_31501 I
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I
AT3G10030 Arabidopsis thaliana AT3G10030 D
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I
Bo5g137800 Brassica oleracea Bo5g137800 I
Bra029812 Brassica rapa Bra029812 I
PK04914.1 Cannabis sativa PK04914.1 D
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I
Carubv10015256m.g Capsella rubella Carubv10015256m.g I
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I
Ca_20148 Cicer arietinum Ca_20148 I
Cla018015 Citrullus lanatus Cla018015 I
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I
Cucsa.378670 Cucumis sativus Cucsa.378670 I
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I
GLYMA13G21371 Glycine max GLYMA13G21371 I
GLYMA10G34520 Glycine max GLYMA10G34520 I
GLYMA10G07490 Glycine max GLYMA10G07490 I
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I
MLOC_28975 Hordeum vulgare MLOC_28975 I
LPERR04G08300 Leersia perrieri LPERR04G08300 I
MDP0000201016 Malus domestica MDP0000201016 I
MDP0000415733 Malus domestica MDP0000415733 I
MDP0000399495 Malus domestica MDP0000399495 I
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I
MTR_1g061600 Medicago truncatula MTR_1g061600 I
mgf008067m Mimulus guttatus mgf008067m I
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I
OB04G18670 Oryza brachyantha OB04G18670 I
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I
BGIOSGA016339 Oryza indica BGIOSGA016339 I
OMERI04G10080 Oryza meridionalis OMERI04G10080 I
ONIVA04G09510 Oryza nivara ONIVA04G09510 I
OPUNC04G09570 Oryza punctata OPUNC04G09570 I
Pavir.J13370 Panicum virgatum Pavir.J13370 I
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I
POPTR_0006s11850 Populus trichocarpa POPTR_0006s11850 I
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I
Pm026265 Prunus mume Pm026265 I
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I
28077.m000081 Ricinus communis 28077.m000081 I
29815.m000504 Ricinus communis 29815.m000504 I
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I
Si009787m.g Setaria italica Si009787m.g I
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I
Sb06g015280 Sorghum bicolor Sb06g015280 I
TCM_022397 Theobroma cacao TCM_022397 I
TCM_043551 Theobroma cacao TCM_043551 I
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I
TRIUR3_22240 Triticum urartu TRIUR3_22240 I
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I
GRMZM2G002978 Zea mays GRMZM2G002978 I