CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ppa-nhr-3
(
Pristionchus pacificus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
PPA28597
T305939_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.817
0.514
GA30480
M02409_2.00
Drosophila pseudoobscura
RAGATCAM
KTGATCTY
PBM
Weirauch et al.(2014)
pTH5877
0.802
0.571
Hr51
M06432_2.00
Drosophila melanogaster
AMRDATCARARGW
WCYTYTGATHYKT
B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012
0.802
0.571
NR2E3
M00373_2.00
Homo sapiens
NRAGATCAMN
NKTGATCTYN
PBM
Barrera et al.(2016)
NR2E3_REF
0.782
0.543
Nr2e3
M02708_2.00
Mus musculus
AAGCTTD
HAAGCTT
SELEX
Mathelier et al.(2014)
MA0164.1
0.782
0.543
Nr2e3
M09328_2.00
Mus musculus
NAAGTCAAAARKCA
TGMYTTTTGACTTN
Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C
0.782
0.543
NR2E3
M00372_2.00
Homo sapiens
AAAGATCA
TGATCTTT
PBM
Barrera et al.(2016)
NR2E3_R77Q
0.782
0.543
NR2E3
M00370_2.00
Homo sapiens
NNNWRABATCANN
NNTGATVTYWNNN
PBM
Barrera et al.(2016)
NR2E3_R76Q
0.755
0.529
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPA28597
Nuclear receptor
46
115
GICVVCSDEASGKHYGVMTCNGCKGFFRRSVRAPKPYECRANGNCPIDRMARNGCRACRFKRCLDVGMDT
Links
Other
Nuclear receptor
family TFs
Other
Pristionchus pacificus
TFs
229 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PTF1A
Equus caballus
ENSECAG00000012711
I
Cmyd_10015086
Chelonia mydas
Cmyd_10015086
N
A_03229
Schistosoma haematobium
A_03229
N
PXEA_0003106601
Protopolystoma xenopodis
PXEA_0003106601
N
SPER_0002440101
Spirometra erinaceieuropaei
SPER_0002440101
N
SSLN_0001785001
Schistocephalus solidus
SSLN_0001785001
N