CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-206
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00011097
T306282_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.898
0.643
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.893
0.629
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
R07B7.13a
Nuclear receptor
41
112
EKCEVCGNPAVGYHYDVATCNGCKAFFRRTVITGRRVICRRRKNCLVEMEPKNRRICPGCRFSKCEEVGMNP
R07B7.13b
Nuclear receptor
41
112
EKCEVCGNPAVGYHYDVATCNGCKAFFRRTVITGRRVICRRRKNCLVEMEPKNRRICPGCRFSKCEEVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
REM1
Arabidopsis lyrata
fgenesh2_kg.7__1010__AT4G31610.1
I
REM1
Arabidopsis thaliana
AT4G31610
D
Cagra.3807s0032
Capsella grandiflora
Cagra.3807s0032
I
Carubv10006696m.g
Capsella rubella
Carubv10006696m.g
I