CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nhr-207
(
Caenorhabditis elegans
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
WBGene00011098
T306283_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.828
0.571
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.822
0.557
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
R07B7.14
Nuclear receptor
34
107
KQCRICRNPAVGYHYDVASCNGCKAFFRRTVITGRLPNCKFGDKCLEDHKIPKPGTRLCGSCRFSKCEQMGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis elegans
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29708.m000185
Ricinus communis
29708.m000185
I
BGIOSGA023694
Oryza indica
BGIOSGA023694
I
Bo3g076180
Brassica oleracea
Bo3g076180
I
Bra023927
Brassica rapa
Bra023927
I
BRADI1G63780
Brachypodium distachyon
BRADI1G63780
I
Cla011250
Citrullus lanatus
Cla011250
I
Cla013874
Citrullus lanatus
Cla013874
I
Gorai.004G035300
Gossypium raimondii
Gorai.004G035300
I
GSMUA_Achr10G12800_001
Musa acuminata
GSMUA_Achr10G12800_001
I
GSMUA_Achr5G27670_001
Musa acuminata
GSMUA_Achr5G27670_001
I
LPERR03G13760
Leersia perrieri
LPERR03G13760
I
MTR_5g087790
Medicago truncatula
MTR_5g087790
I
OLONG_004360
Oryza longistaminata
OLONG_004360
I
ONIVA07G26490
Oryza nivara
ONIVA07G26490
I
orange1.1g009144m.g
Citrus sinensis
orange1.1g009144m.g
I
ORGLA07G0211700
Oryza glaberrima
ORGLA07G0211700
I
ORUFI07G27710
Oryza rufipogon
ORUFI07G27710
I
OS07G0685700
Oryza sativa
OS07G0685700
I
PDK_20s1443543g001
Phoenix dactylifera
PDK_20s1443543g001
I
PGSC0003DMG400005915
Solanum tuberosum
PGSC0003DMG400005915
I
PGSC0003DMG400008712
Solanum tuberosum
PGSC0003DMG400008712
I
Pm017011
Prunus mume
Pm017011
I
Thhalv10001938m.g
Eutrema salsugineum
Thhalv10001938m.g
I
Traes_2AS_409CAEDB6
Triticum aestivum
Traes_2AS_409CAEDB6
I