Ocbimv22038770m.g (Octopus bimaculoides)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Ocbimv22038770m.g T307032_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN

NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.824 0.671
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN

NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.824 0.671
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN

NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.824 0.671
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA

TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.824 0.671
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA

TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.824 0.671
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW

WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.824 0.671
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA

TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.824 0.671
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN

NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.824 0.671
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN

NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.824 0.671
dsf
M06431_2.00
Drosophila melanogaster
AAAAGTCANH

DNTGACTTTT
B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381
0.791 0.643
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22038770m.p Nuclear receptor 19 88

Links

Other Nuclear receptor family TFs
Other Octopus bimaculoides TFs

245 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Met Drosophila virilis FBgn0262800 N
PPAI009130 Phlebotomus papatasi PPAI009130 N
MDOA014837 Musca domestica MDOA014837 N
AMIN010921 Anopheles minimus AMIN010921 N
AMEC005987 Anopheles melas AMEC005987 N
AFUN008135 Anopheles funestus AFUN008135 N
AFAF019435 Anopheles farauti AFAF019435 N
AEPI007105 Anopheles epiroticus AEPI007105 N
ADIR008109 Anopheles dirus ADIR008109 N
ACUA022741 Anopheles culicifacies ACUA022741 N
ACOM024819 Anopheles coluzzii ACOM024819 N
ACHR009875 Anopheles christyi ACHR009875 N
AATE004568 Anopheles atroparvus AATE004568 N
AARA007504 Anopheles arabiensis AARA007504 N
AALB004295 Anopheles albimanus AALB004295 N
LCUP002267 Lucilia cuprina LCUP002267 N
AAEL001746 Aedes aegypti AAEL001746 N
gce Drosophila melanogaster FBgn0261703 N
GE17175 Drosophila yakuba FBgn0234654 N
GK16199 Drosophila willistoni FBgn0218201 N
GK10105 Drosophila willistoni FBgn0212120 N
GJ16946 Drosophila virilis FBgn0204124 N
GD17204 Drosophila simulans FBgn0188768 N
GI21773 Drosophila mojavensis FBgn0144503 N
GI14831 Drosophila mojavensis FBgn0137582 N
GH24193 Drosophila grimshawi FBgn0131649 N
GH17616 Drosophila grimshawi FBgn0125086 N
GF21231 Drosophila ananassae FBgn0098233 N
GA19443 Drosophila pseudoobscura FBgn0079439 N
Bhlh_PAS Anopheles gambiae AGAP006022 N
ADAC003960 Anopheles darlingi ADAC003960 N