CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ocbimv22038770m.g
(
Octopus bimaculoides
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
Ocbimv22038770m.g
T307032_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR2E1
M02394_2.00
Homo sapiens
NGAGGTCARN
NYTGACCTCN
PBM
Weirauch et al.(2014)
pTH6281
0.824
0.671
Nr2e1
M00814_2.00
Mus musculus
NNNGTYRNNN
NNNYRACNNN
PBM
Weirauch et al.(2013)
pTH2936
0.824
0.671
A1YGC6_PANPA
M02421_2.00
Pan paniscus
NNGTCANNN
NNNTGACNN
PBM
Weirauch et al.(2014)
pTH5561
0.824
0.671
NR2E1
M03364_2.00
Homo sapiens
WDAAGTCAA
TTGACTTHW
SELEX
Jolma et al.(2013)
NR2E1_1
0.824
0.671
NR2E1
M03365_2.00
Homo sapiens
RARTCAWDAAGTCA
TGACTTHWTGAYTY
SELEX
Jolma et al.(2013)
NR2E1_2
0.824
0.671
Nr2e1
M03427_2.00
Mus musculus
WDAAGTCAW
WTGACTTHW
SELEX
Jolma et al.(2013)
Nr2e1_1
0.824
0.671
Nr2e1
M03428_2.00
Mus musculus
RRGTCAWDAAGTCA
TGACTTHWTGACYY
SELEX
Jolma et al.(2013)
Nr2e1_2
0.824
0.671
NR2E1
M05585_2.00
Homo sapiens
NNAAGTCAN
NTGACTTNN
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
0.824
0.671
NR2E1
M05586_2.00
Homo sapiens
NDAAGTCAN
NTGACTTHN
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
0.824
0.671
dsf
M06431_2.00
Drosophila melanogaster
AAAAGTCANH
DNTGACTTTT
B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381
0.791
0.643
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ocbimv22038770m.p
Nuclear receptor
19
88
AVCLVCGDRASGKHYGVLSCDGCRGFFKRSIRRNLDYVCKESGACVVDIARRNQCQACRFRKCLDMKMNK
Links
Other
Nuclear receptor
family TFs
Other
Octopus bimaculoides
TFs
245 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Met
Drosophila virilis
FBgn0262800
N
PPAI009130
Phlebotomus papatasi
PPAI009130
N
MDOA014837
Musca domestica
MDOA014837
N
AMIN010921
Anopheles minimus
AMIN010921
N
AMEC005987
Anopheles melas
AMEC005987
N
AFUN008135
Anopheles funestus
AFUN008135
N
AFAF019435
Anopheles farauti
AFAF019435
N
AEPI007105
Anopheles epiroticus
AEPI007105
N
ADIR008109
Anopheles dirus
ADIR008109
N
ACUA022741
Anopheles culicifacies
ACUA022741
N
ACOM024819
Anopheles coluzzii
ACOM024819
N
ACHR009875
Anopheles christyi
ACHR009875
N
AATE004568
Anopheles atroparvus
AATE004568
N
AARA007504
Anopheles arabiensis
AARA007504
N
AALB004295
Anopheles albimanus
AALB004295
N
LCUP002267
Lucilia cuprina
LCUP002267
N
AAEL001746
Aedes aegypti
AAEL001746
N
gce
Drosophila melanogaster
FBgn0261703
N
GE17175
Drosophila yakuba
FBgn0234654
N
GK16199
Drosophila willistoni
FBgn0218201
N
GK10105
Drosophila willistoni
FBgn0212120
N
GJ16946
Drosophila virilis
FBgn0204124
N
GD17204
Drosophila simulans
FBgn0188768
N
GI21773
Drosophila mojavensis
FBgn0144503
N
GI14831
Drosophila mojavensis
FBgn0137582
N
GH24193
Drosophila grimshawi
FBgn0131649
N
GH17616
Drosophila grimshawi
FBgn0125086
N
GF21231
Drosophila ananassae
FBgn0098233
N
GA19443
Drosophila pseudoobscura
FBgn0079439
N
Bhlh_PAS
Anopheles gambiae
AGAP006022
N
ADAC003960
Anopheles darlingi
ADAC003960
N