CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Minc03113
(
Meloidogyne incognita
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
Minc03113
T307352_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc03113
Nuclear receptor
7
88
KQCKVCGTKENVCFHYGVITCRACGSFFRRYLDNDKSKYSKCNYKCLQKQFSNKNKDEKSEGNWEQCKKCRLDKCFSVGMKK
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne incognita
TFs
37 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Minc05939
Meloidogyne incognita
Minc05939
N
0.994
augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0
N
0.994
augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0
N
0.970
Minc05953
Meloidogyne incognita
Minc05953
N
0.969
Minc02822
Meloidogyne incognita
Minc02822
N
0.965
maker-nMf.1.1.scaf08516-augustus-gene-0.5
Meloidogyne floridensis
maker-nMf.1.1.scaf08516-augustus-gene-0.5
N
0.965
augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0
N
0.962
maker-nMf.1.1.scaf03855-augustus-gene-0.7
Meloidogyne floridensis
maker-nMf.1.1.scaf03855-augustus-gene-0.7
N
0.955
maker-nMf.1.1.scaf08489-snap-gene-0.4
Meloidogyne floridensis
maker-nMf.1.1.scaf08489-snap-gene-0.4
N
0.952
Minc03116
Meloidogyne incognita
Minc03116
N
0.951
Minc06648
Meloidogyne incognita
Minc06648
N
0.950
maker-nMf.1.1.scaf11243-snap-gene-0.6
Meloidogyne floridensis
maker-nMf.1.1.scaf11243-snap-gene-0.6
N
0.949
Minc18240
Meloidogyne incognita
Minc18240
N
0.947
MhA1_Contig311.frz3.gene3
Meloidogyne hapla
MhA1_Contig311.frz3.gene3
N
0.947
Minc17472
Meloidogyne incognita
Minc17472
N
0.938
Minc05938
Meloidogyne incognita
Minc05938
N
0.935
Minc11361
Meloidogyne incognita
Minc11361
N
0.935
augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1
N
0.935
Minc11362
Meloidogyne incognita
Minc11362
N
0.926
Minc05944
Meloidogyne incognita
Minc05944
N
0.919
Minc03951
Meloidogyne incognita
Minc03951
N
0.913
Minc05955
Meloidogyne incognita
Minc05955
N
0.895
Minc11359
Meloidogyne incognita
Minc11359
N
0.890
Minc04767
Meloidogyne incognita
Minc04767
N
0.882
Minc04628
Meloidogyne incognita
Minc04628
N
0.874
Minc06656
Meloidogyne incognita
Minc06656
N
0.867
Minc04734
Meloidogyne incognita
Minc04734
N
0.850
Minc05946
Meloidogyne incognita
Minc05946
N
0.841
genemark-nMf.1.1.scaf00124-processed-gene-0.5
Meloidogyne floridensis
genemark-nMf.1.1.scaf00124-processed-gene-0.5
N
0.841
Minc03122
Meloidogyne incognita
Minc03122
N
0.834
Minc05948
Meloidogyne incognita
Minc05948
N
0.834
Minc11357
Meloidogyne incognita
Minc11357
N
0.834
Minc03125
Meloidogyne incognita
Minc03125
N
0.822
Minc03112
Meloidogyne incognita
Minc03112
N
0.807
Minc03124
Meloidogyne incognita
Minc03124
N
0.784
Minc05941
Meloidogyne incognita
Minc05941
N
0.776
Minc05954
Meloidogyne incognita
Minc05954
N
0.766