CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
(
Meloidogyne floridensis
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
T308220_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.871
0.600
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.784
0.514
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0-mRNA-1
Nuclear receptor
13
82
TTCVVCNDVATGNHYSVPSCNGCKTFFRRAIVNNRNFACMGNGKCIVDKGVRCACRACRLEKCIKMGMDT
Links
Other
Nuclear receptor
family TFs
Other
Meloidogyne floridensis
TFs
224 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
I
0.992
MhA1_Contig320.frz3.gene45
Meloidogyne hapla
MhA1_Contig320.frz3.gene45
I
0.990
CBG09380
Caenorhabditis briggsae
CBG09380
I
0.986
ACOC_0000869501
Angiostrongylus costaricensis
ACOC_0000869501
I
0.979
HPBE_0001154501
Heligmosomoides bakeri
HPBE_0001154501
I
0.979
CBN15481
Caenorhabditis brenneri
CBN15481
I
0.978
CBN28528
Caenorhabditis brenneri
CBN28528
I
0.978
CRE30787
Caenorhabditis remanei
CRE30787
I
0.978
NBR_0001576001
Nippostrongylus brasiliensis
NBR_0001576001
I
0.977
HCOI00673400
Haemonchus contortus
HCOI00673400
I
0.976
HCOI01687000
Haemonchus contortus
HCOI01687000
I
0.976
nhr-47
Caenorhabditis elegans
WBGene00003637
I
0.975
DICVIV_03784
Dictyocaulus viviparus
DICVIV_03784
I
0.973
ASU_10584
Ascaris suum
ASU_10584
I
0.969
L596_g19151
Steinernema carpocapsae
L596_g19151
I
0.969
L889_g22901
Steinernema feltiae
L889_g22901
I
0.969
L892_g5079
Steinernema scapterisci
L892_g5079
I
0.969
L893_g15276
Steinernema glaseri
L893_g15276
I
0.969
L898_g8573
Steinernema monticolum
L898_g8573
I
0.969
scaffold314-EXSNAP2012.19
Pristionchus exspectatus
scaffold314-EXSNAP2012.19
I
0.969
ASIM_0001308601
Anisakis simplex
ASIM_0001308601
I
0.968
SMUV_0000475001
Syphacia muris
SMUV_0000475001
I
0.968
PTRK_0000194200
Parastrongyloides trichosuri
PTRK_0000194200
I
0.961
SPAL_0000231300
Strongyloides papillosus
SPAL_0000231300
I
0.959
SVE_1749000
Strongyloides venezuelensis
SVE_1749000
I
0.959
BXY_0360200
Bursaphelenchus xylophilus
BXY_0360200
I
0.958
SSTP_0000408200
Strongyloides stercoralis
SSTP_0000408200
I
0.958
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.926
RSKR_0001171300
Rhabditophanes kr3021
RSKR_0001171300
I
0.921
ANCCAN_14103
Ancylostoma caninum
ANCCAN_14103
I
0.919
ANCCAN_17081
Ancylostoma caninum
ANCCAN_17081
I
0.919
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.917
L596_g23777
Steinernema carpocapsae
L596_g23777
I
0.912
L893_g25227
Steinernema glaseri
L893_g25227
I
0.912
nhr-10
Caenorhabditis elegans
WBGene00003609
I
0.910
ALUE_0002179401
Ascaris lumbricoides
ALUE_0002179401
I
0.910
ASU_12501
Ascaris suum
ASU_12501
I
0.910
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.910
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.910
NECAME_00872
Necator americanus
NECAME_00872
I
0.910
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.909
SPAL_0000490500
Strongyloides papillosus
SPAL_0000490500
I
0.909
SVE_1951500
Strongyloides venezuelensis
SVE_1951500
I
0.909
LOAG_16377
Loa loa
LOAG_16377
I
0.907
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.907
CRE25378
Caenorhabditis remanei
CRE25378
I
0.902
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.902
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.902
SSTP_0001081300
Strongyloides stercoralis
SSTP_0001081300
I
0.902
CBG16594
Caenorhabditis briggsae
CBG16594
I
0.900
CBN20518
Caenorhabditis brenneri
CBN20518
I
0.900
L898_g9866
Steinernema monticolum
L898_g9866
I
0.899
L889_g1557
Steinernema feltiae
L889_g1557
I
0.898
SMUV_0000795201
Syphacia muris
SMUV_0000795201
I
0.897
PPA24468
Pristionchus pacificus
PPA24468
I
0.894
scaffold265-EXSNAP2012.2
Pristionchus exspectatus
scaffold265-EXSNAP2012.2
I
0.894
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.894
L893_g28857
Steinernema glaseri
L893_g28857
I
0.892
WUBG_08038
Wuchereria bancrofti
WUBG_08038
I
0.891
Bm5520
Brugia malayi
Bm5520
I
0.891
LOAG_03407
Loa loa
LOAG_03407
I
0.891
WBGene00240723
Onchocerca volvulus
WBGene00240723
I
0.891
BTMF_0001127801
Brugia timori
BTMF_0001127801
I
0.891
DME_0001010101
Dracunculus medinensis
DME_0001010101
I
0.891
EEL_0000987201
Elaeophora elaphi
EEL_0000987201
I
0.891
nAv.1.0.1.g02923
Acanthocheilonema viteae
nAv.1.0.1.g02923
I
0.891
nOo.2.0.1.g03355
Onchocerca ochengi
nOo.2.0.1.g03355
I
0.891
scaffold43-EXSNAP2012.41
Pristionchus exspectatus
scaffold43-EXSNAP2012.41
I
0.890
CBG02077
Caenorhabditis briggsae
CBG02077
I
0.888
CRE07549
Caenorhabditis remanei
CRE07549
I
0.888
DICVIV_12420
Dictyocaulus viviparus
DICVIV_12420
I
0.888
CBN21115
Caenorhabditis brenneri
CBN21115
I
0.887
ACOC_0000048701
Angiostrongylus costaricensis
ACOC_0000048701
I
0.887
ANCCAN_24419
Ancylostoma caninum
ANCCAN_24419
I
0.887
NECAME_08394
Necator americanus
NECAME_08394
I
0.887
TELCIR_00491
Teladorsagia circumcincta
TELCIR_00491
I
0.887
L596_g12276
Steinernema carpocapsae
L596_g12276
I
0.884
L889_g7780
Steinernema feltiae
L889_g7780
I
0.884
L892_g8671
Steinernema scapterisci
L892_g8671
I
0.884
L898_g22454
Steinernema monticolum
L898_g22454
I
0.884
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.883
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.879
CJA08896
Caenorhabditis japonica
CJA08896
I
0.879
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.879
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.876
MhA1_Contig2491.frz3.gene4
Meloidogyne hapla
MhA1_Contig2491.frz3.gene4
I
0.873
EVEC_0000027301
Enterobius vermicularis
EVEC_0000027301
I
0.872
CBG01866
Caenorhabditis briggsae
CBG01866
I
0.871
CBN19235
Caenorhabditis brenneri
CBN19235
I
0.871
CJA13458
Caenorhabditis japonica
CJA13458
I
0.871
CRE03310
Caenorhabditis remanei
CRE03310
I
0.871
nhr-1
Caenorhabditis elegans
WBGene00003600
D
0.871
ANCCEY_01961
Ancylostoma ceylanicum
ANCCEY_01961
I
0.871
HCOI01554200
Haemonchus contortus
HCOI01554200
I
0.871
HPBE_0000837301
Heligmosomoides bakeri
HPBE_0000837301
I
0.871
L596_g12321
Steinernema carpocapsae
L596_g12321
I
0.868
L889_g29879
Steinernema feltiae
L889_g29879
I
0.868
L893_g3010
Steinernema glaseri
L893_g3010
I
0.868
L898_g2764
Steinernema monticolum
L898_g2764
I
0.868
CRE00149
Caenorhabditis remanei
CRE00149
I
0.867
Bm5319
Brugia malayi
Bm5319
I
0.866
CBN24827
Caenorhabditis brenneri
CBN24827
I
0.866
LOAG_00300
Loa loa
LOAG_00300
I
0.866
PPA21777
Pristionchus pacificus
PPA21777
I
0.866
BTMF_0001388101
Brugia timori
BTMF_0001388101
I
0.866
DME_0000693601
Dracunculus medinensis
DME_0000693601
I
0.866
nDi.2.2.2.g02318
Dirofilaria immitis
nDi.2.2.2.g02318
I
0.866
nOo.2.0.1.g01530
Onchocerca ochengi
nOo.2.0.1.g01530
I
0.866
OFLC_0001450101
Onchocerca flexuosa
OFLC_0001450101
I
0.866
SMUV_0000708401
Syphacia muris
SMUV_0000708401
I
0.866
TCLT_0000399401
Thelazia callipaeda
TCLT_0000399401
I
0.866
nhr-40
Caenorhabditis elegans
WBGene00003630
I
0.865
ACOC_0000700901
Angiostrongylus costaricensis
ACOC_0000700901
I
0.865
DICVIV_09815
Dictyocaulus viviparus
DICVIV_09815
I
0.865
HCOI01292200
Haemonchus contortus
HCOI01292200
I
0.864
HPLM_0000769401
Haemonchus placei
HPLM_0000769401
I
0.864
NECAME_06702
Necator americanus
NECAME_06702
I
0.862
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.861
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.858
L893_g3565
Steinernema glaseri
L893_g3565
I
0.857
WBGene00241993
Onchocerca volvulus
WBGene00241993
I
0.856
BXY_0988800
Bursaphelenchus xylophilus
BXY_0988800
I
0.856
L596_g702
Steinernema carpocapsae
L596_g702
I
0.855
L892_g5067
Steinernema scapterisci
L892_g5067
I
0.855
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.853
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.853
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.853
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.851
ASU_03657
Ascaris suum
ASU_03657
I
0.849
PEQ_0000722401
Parascaris equorum
PEQ_0000722401
I
0.849
scaffold584-EXSNAP2012.2
Pristionchus exspectatus
scaffold584-EXSNAP2012.2
I
0.844
scaffold726-EXSNAP2012.5
Pristionchus exspectatus
scaffold726-EXSNAP2012.5
I
0.844
ASIM_0001569801
Anisakis simplex
ASIM_0001569801
I
0.835
CBG00093
Caenorhabditis briggsae
CBG00093
I
0.833
CBN07240
Caenorhabditis brenneri
CBN07240
I
0.833
CJA06153
Caenorhabditis japonica
CJA06153
I
0.833
CRE24074
Caenorhabditis remanei
CRE24074
I
0.833
nhr-17
Caenorhabditis elegans
WBGene00003616
I
0.833
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.827
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.827
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.827
ANCCEY_01254
Ancylostoma ceylanicum
ANCCEY_01254
I
0.826
L889_g1891
Steinernema feltiae
L889_g1891
I
0.826
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.826
PPA24481
Pristionchus pacificus
PPA24481
I
0.816
scaffold552-EXSNAP2012.17
Pristionchus exspectatus
scaffold552-EXSNAP2012.17
I
0.816
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.814
SPAL_0000038800
Strongyloides papillosus
SPAL_0000038800
I
0.814
Ppa-nhr-120
Pristionchus pacificus
PPA00183
I
0.813
scaffold384-EXSNAP2012.4
Pristionchus exspectatus
scaffold384-EXSNAP2012.4
I
0.813
scaffold572-EXSNAP2012.7
Pristionchus exspectatus
scaffold572-EXSNAP2012.7
I
0.813
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.812
PTRK_0000480700
Parastrongyloides trichosuri
PTRK_0000480700
I
0.812
SPAL_0001712900
Strongyloides papillosus
SPAL_0001712900
I
0.812
SSTP_0001253400
Strongyloides stercoralis
SSTP_0001253400
I
0.812
SVE_0146100
Strongyloides venezuelensis
SVE_0146100
I
0.812
L893_g15045
Steinernema glaseri
L893_g15045
I
0.811
RSKR_0000342500
Rhabditophanes kr3021
RSKR_0000342500
I
0.810
TCLT_0000256201
Thelazia callipaeda
TCLT_0000256201
I
0.810
CJA00680
Caenorhabditis japonica
CJA00680
I
0.802
GPLIN_000337500
Globodera pallida
GPLIN_000337500
I
0.799
ACAC_0000711701
Angiostrongylus cantonensis
ACAC_0000711701
I
0.798
DICVIV_00957
Dictyocaulus viviparus
DICVIV_00957
I
0.798
HCOI00618700
Haemonchus contortus
HCOI00618700
I
0.798
TCNE_0001076801
Toxocara canis
TCNE_0001076801
N
0.798
L596_g14199
Steinernema carpocapsae
L596_g14199
I
0.792
L892_g2422
Steinernema scapterisci
L892_g2422
I
0.792
SVE_0268000
Strongyloides venezuelensis
SVE_0268000
I
0.792
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
I
0.791
ASIM_0001238601
Anisakis simplex
ASIM_0001238601
N
0.790
HPBE_0000704501
Heligmosomoides bakeri
HPBE_0000704501
I
0.790
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.786
L889_g22425
Steinernema feltiae
L889_g22425
N
0.786
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.786
CBG10857
Caenorhabditis briggsae
CBG10857
I
0.785
CRE00606
Caenorhabditis remanei
CRE00606
I
0.785
nhr-173
Caenorhabditis elegans
WBGene00016975
I
0.785
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.784
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.784
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.784
CRE08259
Caenorhabditis remanei
CRE08259
I
0.784
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.784
ASU_03870
Ascaris suum
ASU_03870
I
0.784
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.784
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.783
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.783
LOAG_08615
Loa loa
LOAG_08615
I
0.782
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.782
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.782
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.777
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.777
scaffold426-EXSNAP2012.35
Pristionchus exspectatus
scaffold426-EXSNAP2012.35
I
0.776
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.776
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.776
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
I
0.774
PTRK_0001163100
Parastrongyloides trichosuri
PTRK_0001163100
I
0.770
SPAL_0001084400
Strongyloides papillosus
SPAL_0001084400
I
0.770
SPAL_0001084500
Strongyloides papillosus
SPAL_0001084500
I
0.770
SSTP_0001035300
Strongyloides stercoralis
SSTP_0001035300
I
0.770
SVE_0956400
Strongyloides venezuelensis
SVE_0956400
I
0.770
CRE26981
Caenorhabditis remanei
CRE26981
I
0.768
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.766
L893_g22683
Steinernema glaseri
L893_g22683
I
0.764
scaffold251-EXSNAP2012.44
Pristionchus exspectatus
scaffold251-EXSNAP2012.44
I
0.763
scaffold826-EXSNAP2012.10
Pristionchus exspectatus
scaffold826-EXSNAP2012.10
I
0.763
L889_g8914
Steinernema feltiae
L889_g8914
I
0.762
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.761
Bm4980
Brugia malayi
Bm4980
I
0.760
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.760
ASU_02770
Ascaris suum
ASU_02770
I
0.759
EVEC_0000477801
Enterobius vermicularis
EVEC_0000477801
I
0.759
L893_g13285
Steinernema glaseri
L893_g13285
I
0.759
scaffold552-EXSNAP2012.18
Pristionchus exspectatus
scaffold552-EXSNAP2012.18
I
0.759
SMUV_0000657401
Syphacia muris
SMUV_0000657401
I
0.759
Minc13747
Meloidogyne incognita
Minc13747
I
0.757
Minc17538
Meloidogyne incognita
Minc17538
I
0.757
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.757
L889_g17247
Steinernema feltiae
L889_g17247
I
0.757
L898_g26357
Steinernema monticolum
L898_g26357
I
0.757
MhA1_Contig817.frz3.gene1
Meloidogyne hapla
MhA1_Contig817.frz3.gene1
I
0.757
PPA06637
Pristionchus pacificus
PPA06637
I
0.751
GPLIN_000284100
Globodera pallida
GPLIN_000284100
I
0.751
L898_g30390
Steinernema monticolum
L898_g30390
I
0.750
CJA37776
Caenorhabditis japonica
CJA37776
I
0.746