CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HPBE_0001154501
(
Heligmosomoides bakeri
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
HPBE_0001154501
T308867_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.935
0.671
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.802
0.543
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HPBE_0001154501-mRNA-1
Nuclear receptor
9
78
TLCVVCEDVATGNHYSVPSCNGCKTFFRRAVVNNRMFTCMGNGDCPVNKGVRCACRHCRLKKCLLVGMDK
Links
Other
Nuclear receptor
family TFs
Other
Heligmosomoides bakeri
TFs
211 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACOC_0000869501
Angiostrongylus costaricensis
ACOC_0000869501
I
0.993
HCOI00673400
Haemonchus contortus
HCOI00673400
I
0.993
HCOI01687000
Haemonchus contortus
HCOI01687000
I
0.993
DICVIV_03784
Dictyocaulus viviparus
DICVIV_03784
I
0.992
NBR_0001576001
Nippostrongylus brasiliensis
NBR_0001576001
I
0.992
ASU_10584
Ascaris suum
ASU_10584
I
0.988
L596_g19151
Steinernema carpocapsae
L596_g19151
I
0.988
L889_g22901
Steinernema feltiae
L889_g22901
I
0.988
L892_g5079
Steinernema scapterisci
L892_g5079
I
0.988
L893_g15276
Steinernema glaseri
L893_g15276
I
0.988
L898_g8573
Steinernema monticolum
L898_g8573
I
0.988
ASIM_0001308601
Anisakis simplex
ASIM_0001308601
I
0.987
scaffold314-EXSNAP2012.19
Pristionchus exspectatus
scaffold314-EXSNAP2012.19
I
0.987
CBN15481
Caenorhabditis brenneri
CBN15481
I
0.986
CBN28528
Caenorhabditis brenneri
CBN28528
I
0.986
CRE30787
Caenorhabditis remanei
CRE30787
I
0.986
SMUV_0000475001
Syphacia muris
SMUV_0000475001
I
0.986
nhr-47
Caenorhabditis elegans
WBGene00003637
I
0.984
CBG09380
Caenorhabditis briggsae
CBG09380
I
0.980
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15282-processed-gene-0.0
I
0.979
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf15936-processed-gene-0.0
I
0.979
MhA1_Contig320.frz3.gene45
Meloidogyne hapla
MhA1_Contig320.frz3.gene45
I
0.974
BXY_0360200
Bursaphelenchus xylophilus
BXY_0360200
I
0.971
PTRK_0000194200
Parastrongyloides trichosuri
PTRK_0000194200
I
0.956
SSTP_0000408200
Strongyloides stercoralis
SSTP_0000408200
I
0.955
SVE_1749000
Strongyloides venezuelensis
SVE_1749000
I
0.955
SPAL_0000231300
Strongyloides papillosus
SPAL_0000231300
I
0.953
EVEC_0000027301
Enterobius vermicularis
EVEC_0000027301
I
0.944
MhA1_Contig2491.frz3.gene4
Meloidogyne hapla
MhA1_Contig2491.frz3.gene4
I
0.940
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.940
ALUE_0002179401
Ascaris lumbricoides
ALUE_0002179401
I
0.939
ASU_12501
Ascaris suum
ASU_12501
I
0.939
NECAME_00872
Necator americanus
NECAME_00872
I
0.939
SPAL_0000490500
Strongyloides papillosus
SPAL_0000490500
I
0.939
SVE_1951500
Strongyloides venezuelensis
SVE_1951500
I
0.939
nhr-10
Caenorhabditis elegans
WBGene00003609
I
0.938
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.938
L596_g23777
Steinernema carpocapsae
L596_g23777
I
0.938
L893_g25227
Steinernema glaseri
L893_g25227
I
0.938
ANCCAN_14103
Ancylostoma caninum
ANCCAN_14103
I
0.937
ANCCAN_17081
Ancylostoma caninum
ANCCAN_17081
I
0.937
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.937
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.937
L596_g12276
Steinernema carpocapsae
L596_g12276
I
0.937
L889_g7780
Steinernema feltiae
L889_g7780
I
0.937
L892_g8671
Steinernema scapterisci
L892_g8671
I
0.937
L898_g22454
Steinernema monticolum
L898_g22454
I
0.937
SMUV_0000708401
Syphacia muris
SMUV_0000708401
I
0.937
CBG01866
Caenorhabditis briggsae
CBG01866
I
0.935
CBN19235
Caenorhabditis brenneri
CBN19235
I
0.935
CJA13458
Caenorhabditis japonica
CJA13458
I
0.935
CRE03310
Caenorhabditis remanei
CRE03310
I
0.935
nhr-1
Caenorhabditis elegans
WBGene00003600
D
0.935
ANCCEY_01961
Ancylostoma ceylanicum
ANCCEY_01961
I
0.935
HCOI01554200
Haemonchus contortus
HCOI01554200
I
0.935
HPBE_0000837301
Heligmosomoides bakeri
HPBE_0000837301
I
0.935
Bm5319
Brugia malayi
Bm5319
I
0.933
LOAG_00300
Loa loa
LOAG_00300
I
0.933
BTMF_0001388101
Brugia timori
BTMF_0001388101
I
0.933
L596_g12321
Steinernema carpocapsae
L596_g12321
I
0.933
L889_g29879
Steinernema feltiae
L889_g29879
I
0.933
L893_g3010
Steinernema glaseri
L893_g3010
I
0.933
L898_g2764
Steinernema monticolum
L898_g2764
I
0.933
nDi.2.2.2.g02318
Dirofilaria immitis
nDi.2.2.2.g02318
I
0.933
nOo.2.0.1.g01530
Onchocerca ochengi
nOo.2.0.1.g01530
I
0.933
OFLC_0001450101
Onchocerca flexuosa
OFLC_0001450101
I
0.933
TCLT_0000399401
Thelazia callipaeda
TCLT_0000399401
I
0.933
CBG16594
Caenorhabditis briggsae
CBG16594
I
0.932
CBN20518
Caenorhabditis brenneri
CBN20518
I
0.932
CRE25378
Caenorhabditis remanei
CRE25378
I
0.932
ACOC_0000700901
Angiostrongylus costaricensis
ACOC_0000700901
I
0.928
DICVIV_09815
Dictyocaulus viviparus
DICVIV_09815
I
0.928
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.928
WBGene00241993
Onchocerca volvulus
WBGene00241993
I
0.927
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.925
L596_g702
Steinernema carpocapsae
L596_g702
I
0.923
L892_g5067
Steinernema scapterisci
L892_g5067
I
0.923
scaffold584-EXSNAP2012.2
Pristionchus exspectatus
scaffold584-EXSNAP2012.2
I
0.922
scaffold726-EXSNAP2012.5
Pristionchus exspectatus
scaffold726-EXSNAP2012.5
I
0.922
BXY_0988800
Bursaphelenchus xylophilus
BXY_0988800
I
0.921
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.918
CBG00093
Caenorhabditis briggsae
CBG00093
I
0.913
CJA06153
Caenorhabditis japonica
CJA06153
I
0.913
CRE24074
Caenorhabditis remanei
CRE24074
I
0.913
nhr-17
Caenorhabditis elegans
WBGene00003616
I
0.913
SSTP_0001081300
Strongyloides stercoralis
SSTP_0001081300
I
0.912
PTRK_0000480700
Parastrongyloides trichosuri
PTRK_0000480700
I
0.911
SPAL_0001712900
Strongyloides papillosus
SPAL_0001712900
I
0.911
SSTP_0001253400
Strongyloides stercoralis
SSTP_0001253400
I
0.911
SVE_0146100
Strongyloides venezuelensis
SVE_0146100
I
0.911
CBN07240
Caenorhabditis brenneri
CBN07240
I
0.910
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.910
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.910
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.910
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.910
RSKR_0000342500
Rhabditophanes kr3021
RSKR_0000342500
I
0.904
DME_0000693601
Dracunculus medinensis
DME_0000693601
I
0.903
BXY_0599800
Bursaphelenchus xylophilus
BXY_0599800
I
0.900
L893_g15045
Steinernema glaseri
L893_g15045
I
0.897
PPA24468
Pristionchus pacificus
PPA24468
I
0.895
scaffold265-EXSNAP2012.2
Pristionchus exspectatus
scaffold265-EXSNAP2012.2
I
0.895
RSKR_0001171300
Rhabditophanes kr3021
RSKR_0001171300
I
0.894
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.893
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.893
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.893
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.893
CBG02077
Caenorhabditis briggsae
CBG02077
I
0.892
CRE07549
Caenorhabditis remanei
CRE07549
I
0.892
DICVIV_12420
Dictyocaulus viviparus
DICVIV_12420
I
0.892
CBN21115
Caenorhabditis brenneri
CBN21115
I
0.891
ACOC_0000048701
Angiostrongylus costaricensis
ACOC_0000048701
I
0.891
ANCCAN_24419
Ancylostoma caninum
ANCCAN_24419
I
0.891
TELCIR_00491
Teladorsagia circumcincta
TELCIR_00491
I
0.891
WUBG_08038
Wuchereria bancrofti
WUBG_08038
I
0.884
Bm5520
Brugia malayi
Bm5520
I
0.884
LOAG_03407
Loa loa
LOAG_03407
I
0.884
WBGene00240723
Onchocerca volvulus
WBGene00240723
I
0.884
BTMF_0001127801
Brugia timori
BTMF_0001127801
I
0.884
DME_0001010101
Dracunculus medinensis
DME_0001010101
I
0.884
EEL_0000987201
Elaeophora elaphi
EEL_0000987201
I
0.884
nAv.1.0.1.g02923
Acanthocheilonema viteae
nAv.1.0.1.g02923
I
0.884
nOo.2.0.1.g03355
Onchocerca ochengi
nOo.2.0.1.g03355
I
0.884
SMUV_0000795201
Syphacia muris
SMUV_0000795201
I
0.884
GPLIN_000337500
Globodera pallida
GPLIN_000337500
I
0.883
PPA20196
Pristionchus pacificus
PPA20196
I
0.876
scaffold290-EXSNAP2012.30
Pristionchus exspectatus
scaffold290-EXSNAP2012.30
I
0.876
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
I
0.875
nhr-40
Caenorhabditis elegans
WBGene00003630
I
0.869
L889_g8914
Steinernema feltiae
L889_g8914
I
0.869
PTRK_0001163100
Parastrongyloides trichosuri
PTRK_0001163100
I
0.869
SPAL_0001084400
Strongyloides papillosus
SPAL_0001084400
I
0.869
SPAL_0001084500
Strongyloides papillosus
SPAL_0001084500
I
0.869
SSTP_0001035300
Strongyloides stercoralis
SSTP_0001035300
I
0.869
SVE_0956400
Strongyloides venezuelensis
SVE_0956400
I
0.869
ASU_02770
Ascaris suum
ASU_02770
I
0.868
EVEC_0000477801
Enterobius vermicularis
EVEC_0000477801
I
0.868
L893_g22683
Steinernema glaseri
L893_g22683
I
0.868
SMUV_0000657401
Syphacia muris
SMUV_0000657401
I
0.868
NECAME_06702
Necator americanus
NECAME_06702
I
0.867
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf24822-processed-gene-0.0
I
0.860
ACOC_0000744201
Angiostrongylus costaricensis
ACOC_0000744201
I
0.858
ANCCAN_19046
Ancylostoma caninum
ANCCAN_19046
I
0.858
ANCDUO_17367
Ancylostoma duodenale
ANCDUO_17367
I
0.858
DICVIV_13545
Dictyocaulus viviparus
DICVIV_13545
I
0.858
HCOI00052900
Haemonchus contortus
HCOI00052900
I
0.858
NECAME_01070
Necator americanus
NECAME_01070
I
0.858
PPA16374
Pristionchus pacificus
PPA16374
I
0.848
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.840
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.840
SPAL_0000038800
Strongyloides papillosus
SPAL_0000038800
I
0.840
L889_g1891
Steinernema feltiae
L889_g1891
I
0.838
SVE_0268000
Strongyloides venezuelensis
SVE_0268000
I
0.837
LOAG_16377
Loa loa
LOAG_16377
I
0.835
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.835
ANCCEY_01254
Ancylostoma ceylanicum
ANCCEY_01254
I
0.831
L898_g9866
Steinernema monticolum
L898_g9866
I
0.829
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.828
L889_g1557
Steinernema feltiae
L889_g1557
I
0.828
NECAME_08394
Necator americanus
NECAME_08394
I
0.828
L893_g28857
Steinernema glaseri
L893_g28857
I
0.822
Bm4980
Brugia malayi
Bm4980
I
0.820
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.820
HCOI01292200
Haemonchus contortus
HCOI01292200
I
0.817
HPLM_0000769401
Haemonchus placei
HPLM_0000769401
I
0.815
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.814
scaffold43-EXSNAP2012.41
Pristionchus exspectatus
scaffold43-EXSNAP2012.41
I
0.810
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.809
ASU_03657
Ascaris suum
ASU_03657
I
0.805
PEQ_0000722401
Parascaris equorum
PEQ_0000722401
I
0.805
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.803
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.803
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.802
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.802
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.802
CRE08259
Caenorhabditis remanei
CRE08259
I
0.802
LOAG_08615
Loa loa
LOAG_08615
I
0.802
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.802
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.802
ASU_03870
Ascaris suum
ASU_03870
I
0.802
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.802
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.802
CBN24827
Caenorhabditis brenneri
CBN24827
I
0.797
PPA21777
Pristionchus pacificus
PPA21777
I
0.797
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.794
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.794
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.793
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.793
L893_g3565
Steinernema glaseri
L893_g3565
I
0.792
L898_g30390
Steinernema monticolum
L898_g30390
I
0.791
CRE26981
Caenorhabditis remanei
CRE26981
I
0.788
ASIM_0001569801
Anisakis simplex
ASIM_0001569801
I
0.788
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.787
CJA08896
Caenorhabditis japonica
CJA08896
I
0.787
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.787
CRE00149
Caenorhabditis remanei
CRE00149
I
0.786
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.786
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.784
RSKR_0000625800
Rhabditophanes kr3021
RSKR_0000625800
I
0.783
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.782
L893_g13285
Steinernema glaseri
L893_g13285
I
0.780
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.779
ASIM_0001238601
Anisakis simplex
ASIM_0001238601
N
0.779
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.779
PPA24481
Pristionchus pacificus
PPA24481
I
0.773
scaffold552-EXSNAP2012.17
Pristionchus exspectatus
scaffold552-EXSNAP2012.17
I
0.773
NBR_0000088601
Nippostrongylus brasiliensis
NBR_0000088601
N
0.771
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.769
L596_g14199
Steinernema carpocapsae
L596_g14199
I
0.763
L892_g2422
Steinernema scapterisci
L892_g2422
I
0.763
CJA00680
Caenorhabditis japonica
CJA00680
I
0.760
PEQ_0000894301
Parascaris equorum
PEQ_0000894301
I
0.759