CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HPBE_0001246601
(
Heligmosomoides bakeri
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
HPBE_0001246601
T308868_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.807
0.586
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.799
0.586
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.797
0.600
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HPBE_0001246601-mRNA-1
Nuclear receptor
40
111
TTCAVCGDSASGYHYEVPSCNGCKTFFRRTVLSQRKYECKKGGQCFAVLPKDRRCTCRACRFQQCVAVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Heligmosomoides bakeri
TFs
167 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CBG23380
Caenorhabditis briggsae
CBG23380
D
0.797
nhr-49
Caenorhabditis elegans
WBGene00003639
D
0.807
nhr-154
Caenorhabditis elegans
WBGene00007547
D
0.799
Bm4980
Brugia malayi
Bm4980
I
0.802
CBG00093
Caenorhabditis briggsae
CBG00093
I
0.787
CBG03844
Caenorhabditis briggsae
CBG03844
I
0.807
CBG10855
Caenorhabditis briggsae
CBG10855
I
0.940
CBG10857
Caenorhabditis briggsae
CBG10857
I
0.962
CBG23318
Caenorhabditis briggsae
CBG23318
I
0.819
CBG23319
Caenorhabditis briggsae
CBG23319
I
0.806
CBG23381
Caenorhabditis briggsae
CBG23381
I
0.810
CBN07240
Caenorhabditis brenneri
CBN07240
I
0.787
CBN18198
Caenorhabditis brenneri
CBN18198
I
0.807
CBN20749
Caenorhabditis brenneri
CBN20749
I
0.807
CBN24827
Caenorhabditis brenneri
CBN24827
I
0.941
CBN28497
Caenorhabditis brenneri
CBN28497
I
0.797
CBN28791
Caenorhabditis brenneri
CBN28791
I
0.796
CBN29725
Caenorhabditis brenneri
CBN29725
I
0.756
CBN30215
Caenorhabditis brenneri
CBN30215
I
0.806
CJA00680
Caenorhabditis japonica
CJA00680
I
0.965
CJA01292
Caenorhabditis japonica
CJA01292
I
0.790
CJA06153
Caenorhabditis japonica
CJA06153
I
0.787
CJA08896
Caenorhabditis japonica
CJA08896
I
0.940
CJA37776
Caenorhabditis japonica
CJA37776
I
0.779
CJA41479
Caenorhabditis japonica
CJA41479
I
0.827
CRE00149
Caenorhabditis remanei
CRE00149
I
0.945
CRE00606
Caenorhabditis remanei
CRE00606
I
0.962
CRE08259
Caenorhabditis remanei
CRE08259
I
0.807
CRE24074
Caenorhabditis remanei
CRE24074
I
0.787
CRE26981
Caenorhabditis remanei
CRE26981
I
0.859
CRE26982
Caenorhabditis remanei
CRE26982
I
0.817
CRE27050
Caenorhabditis remanei
CRE27050
I
0.797
CRE27052
Caenorhabditis remanei
CRE27052
I
0.790
CRE27053
Caenorhabditis remanei
CRE27053
I
0.756
LOAG_08615
Loa loa
LOAG_08615
I
0.806
LOAG_16377
Loa loa
LOAG_16377
I
0.944
Ppa-nhr-120
Pristionchus pacificus
PPA00183
I
0.953
PPA06637
Pristionchus pacificus
PPA06637
I
0.832
PPA16374
Pristionchus pacificus
PPA16374
I
0.872
PPA20196
Pristionchus pacificus
PPA20196
I
0.868
PPA21777
Pristionchus pacificus
PPA21777
I
0.942
PPA24468
Pristionchus pacificus
PPA24468
I
0.795
PPA24481
Pristionchus pacificus
PPA24481
I
0.952
PPA29597
Pristionchus pacificus
PPA29597
I
0.918
nhr-17
Caenorhabditis elegans
WBGene00003616
I
0.787
nhr-68
Caenorhabditis elegans
WBGene00003658
I
0.819
nhr-101
Caenorhabditis elegans
WBGene00003691
I
0.817
nhr-120
Caenorhabditis elegans
WBGene00003710
I
0.940
nhr-136
Caenorhabditis elegans
WBGene00003726
I
0.881
nhr-153
Caenorhabditis elegans
WBGene00007546
I
0.802
nhr-173
Caenorhabditis elegans
WBGene00016975
I
0.962
WBGene00236987
Onchocerca volvulus
WBGene00236987
I
0.797
WBGene00240403
Onchocerca volvulus
WBGene00240403
I
0.933
ACAC_0000711701
Angiostrongylus cantonensis
ACAC_0000711701
I
0.796
ACAC_0001297301
Angiostrongylus cantonensis
ACAC_0001297301
I
0.791
ACOC_0000744201
Angiostrongylus costaricensis
ACOC_0000744201
I
0.843
ANCCAN_09880
Ancylostoma caninum
ANCCAN_09880
I
0.990
ANCCAN_19046
Ancylostoma caninum
ANCCAN_19046
I
0.843
ANCCEY_01254
Ancylostoma ceylanicum
ANCCEY_01254
I
0.934
ANCDUO_17367
Ancylostoma duodenale
ANCDUO_17367
I
0.843
ASIM_0001569801
Anisakis simplex
ASIM_0001569801
I
0.947
ASU_02755
Ascaris suum
ASU_02755
I
0.768
ASU_02770
Ascaris suum
ASU_02770
I
0.871
ASU_03657
Ascaris suum
ASU_03657
I
0.952
ASU_03870
Ascaris suum
ASU_03870
I
0.807
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf06210-processed-gene-0.0
I
0.749
BTMF_0000217201
Brugia timori
BTMF_0000217201
I
0.802
BTMF_0000941401
Brugia timori
BTMF_0000941401
I
0.944
BXY_0631600
Bursaphelenchus xylophilus
BXY_0631600
I
0.747
BXY_0988800
Bursaphelenchus xylophilus
BXY_0988800
I
0.864
BXY_1057600
Bursaphelenchus xylophilus
BXY_1057600
I
0.801
DICVIV_00957
Dictyocaulus viviparus
DICVIV_00957
I
0.796
DICVIV_13545
Dictyocaulus viviparus
DICVIV_13545
I
0.843
DME_0000591901
Dracunculus medinensis
DME_0000591901
I
0.812
EEL_0000989101
Elaeophora elaphi
EEL_0000989101
I
0.943
EVEC_0000477801
Enterobius vermicularis
EVEC_0000477801
I
0.871
EVEC_0001313601
Enterobius vermicularis
EVEC_0001313601
I
0.781
GPLIN_001175700
Globodera pallida
GPLIN_001175700
I
0.810
Hba_12763
Heterorhabditis bacteriophora
Hba_12763
I
0.949
HCOI00052900
Haemonchus contortus
HCOI00052900
I
0.843
HCOI00601000
Haemonchus contortus
HCOI00601000
I
0.763
HCOI00618700
Haemonchus contortus
HCOI00618700
I
0.796
HCOI01292200
Haemonchus contortus
HCOI01292200
I
0.938
HCOI01525900
Haemonchus contortus
HCOI01525900
I
0.989
HPBE_0000704501
Heligmosomoides bakeri
HPBE_0000704501
I
0.917
HPLM_0000564201
Haemonchus placei
HPLM_0000564201
I
0.763
HPLM_0000769401
Haemonchus placei
HPLM_0000769401
I
0.937
L596_g11035
Steinernema carpocapsae
L596_g11035
I
0.789
L596_g14199
Steinernema carpocapsae
L596_g14199
I
0.850
L596_g23863
Steinernema carpocapsae
L596_g23863
I
0.820
L596_g27472
Steinernema carpocapsae
L596_g27472
I
0.931
L596_g702
Steinernema carpocapsae
L596_g702
I
0.793
L889_g1557
Steinernema feltiae
L889_g1557
I
0.944
L889_g17247
Steinernema feltiae
L889_g17247
I
0.789
L889_g1891
Steinernema feltiae
L889_g1891
I
0.910
L889_g8914
Steinernema feltiae
L889_g8914
I
0.816
L892_g17612
Steinernema scapterisci
L892_g17612
I
0.935
L892_g2422
Steinernema scapterisci
L892_g2422
I
0.850
L892_g4169
Steinernema scapterisci
L892_g4169
I
0.946
L892_g5067
Steinernema scapterisci
L892_g5067
I
0.793
L893_g13285
Steinernema glaseri
L893_g13285
I
0.793
L893_g15045
Steinernema glaseri
L893_g15045
I
0.806
L893_g22683
Steinernema glaseri
L893_g22683
I
0.820
L893_g28857
Steinernema glaseri
L893_g28857
I
0.951
L893_g3565
Steinernema glaseri
L893_g3565
I
0.936
L898_g26357
Steinernema monticolum
L898_g26357
I
0.789
L898_g30390
Steinernema monticolum
L898_g30390
I
0.815
L898_g9866
Steinernema monticolum
L898_g9866
I
0.944
NECAME_01070
Necator americanus
NECAME_01070
I
0.843
NECAME_01944
Necator americanus
NECAME_01944
I
0.991
NECAME_08394
Necator americanus
NECAME_08394
I
0.944
nOo.2.0.1.g02345
Onchocerca ochengi
nOo.2.0.1.g02345
I
0.797
PEQ_0000391501
Parascaris equorum
PEQ_0000391501
I
0.807
PEQ_0000722401
Parascaris equorum
PEQ_0000722401
I
0.952
PEQ_0000894301
Parascaris equorum
PEQ_0000894301
I
0.777
PTRK_0000480700
Parastrongyloides trichosuri
PTRK_0000480700
I
0.754
PTRK_0000720500
Parastrongyloides trichosuri
PTRK_0000720500
I
0.764
PTRK_0000994100
Parastrongyloides trichosuri
PTRK_0000994100
I
0.786
PTRK_0001020800
Parastrongyloides trichosuri
PTRK_0001020800
I
0.772
PTRK_0001163100
Parastrongyloides trichosuri
PTRK_0001163100
I
0.882
PTRK_0001312000
Parastrongyloides trichosuri
PTRK_0001312000
I
0.748
RSKR_0000178700
Rhabditophanes kr3021
RSKR_0000178700
I
0.769
RSKR_0000342500
Rhabditophanes kr3021
RSKR_0000342500
I
0.829
scaffold251-EXSNAP2012.44
Pristionchus exspectatus
scaffold251-EXSNAP2012.44
I
0.814
scaffold265-EXSNAP2012.2
Pristionchus exspectatus
scaffold265-EXSNAP2012.2
I
0.795
scaffold290-EXSNAP2012.30
Pristionchus exspectatus
scaffold290-EXSNAP2012.30
I
0.868
scaffold384-EXSNAP2012.4
Pristionchus exspectatus
scaffold384-EXSNAP2012.4
I
0.953
scaffold426-EXSNAP2012.35
Pristionchus exspectatus
scaffold426-EXSNAP2012.35
I
0.925
scaffold43-EXSNAP2012.41
Pristionchus exspectatus
scaffold43-EXSNAP2012.41
I
0.946
scaffold552-EXSNAP2012.17
Pristionchus exspectatus
scaffold552-EXSNAP2012.17
I
0.952
scaffold552-EXSNAP2012.18
Pristionchus exspectatus
scaffold552-EXSNAP2012.18
I
0.894
scaffold572-EXSNAP2012.7
Pristionchus exspectatus
scaffold572-EXSNAP2012.7
I
0.953
scaffold584-EXSNAP2012.2
Pristionchus exspectatus
scaffold584-EXSNAP2012.2
I
0.835
scaffold598-EXSNAP2012.5
Pristionchus exspectatus
scaffold598-EXSNAP2012.5
I
0.831
scaffold605-EXSNAP2012.9
Pristionchus exspectatus
scaffold605-EXSNAP2012.9
I
0.790
scaffold726-EXSNAP2012.5
Pristionchus exspectatus
scaffold726-EXSNAP2012.5
I
0.835
scaffold826-EXSNAP2012.10
Pristionchus exspectatus
scaffold826-EXSNAP2012.10
I
0.814
SMUV_0000657401
Syphacia muris
SMUV_0000657401
I
0.871
SMUV_0001072301
Syphacia muris
SMUV_0001072301
I
0.902
SPAL_0000841700
Strongyloides papillosus
SPAL_0000841700
I
0.763
SPAL_0001084400
Strongyloides papillosus
SPAL_0001084400
I
0.882
SPAL_0001084500
Strongyloides papillosus
SPAL_0001084500
I
0.882
SPAL_0001099500
Strongyloides papillosus
SPAL_0001099500
I
0.772
SPAL_0001637600
Strongyloides papillosus
SPAL_0001637600
I
0.790
SPAL_0001712900
Strongyloides papillosus
SPAL_0001712900
I
0.754
SSTP_0000055100
Strongyloides stercoralis
SSTP_0000055100
I
0.790
SSTP_0000145700
Strongyloides stercoralis
SSTP_0000145700
I
0.764
SSTP_0000546600
Strongyloides stercoralis
SSTP_0000546600
I
0.771
SSTP_0000769100
Strongyloides stercoralis
SSTP_0000769100
I
0.772
SSTP_0001035300
Strongyloides stercoralis
SSTP_0001035300
I
0.882
SSTP_0001253400
Strongyloides stercoralis
SSTP_0001253400
I
0.754
SVE_0146100
Strongyloides venezuelensis
SVE_0146100
I
0.754
SVE_0429000
Strongyloides venezuelensis
SVE_0429000
I
0.790
SVE_0858700
Strongyloides venezuelensis
SVE_0858700
I
0.772
SVE_0956400
Strongyloides venezuelensis
SVE_0956400
I
0.882
SVE_1799100
Strongyloides venezuelensis
SVE_1799100
I
0.763
TCLT_0000256201
Thelazia callipaeda
TCLT_0000256201
I
0.847
TCLT_0000461101
Thelazia callipaeda
TCLT_0000461101
I
0.809
PPA10975
Pristionchus pacificus
PPA10975
N
0.869
ALUE_0001920701
Ascaris lumbricoides
ALUE_0001920701
N
0.772
GPLIN_000694800
Globodera pallida
GPLIN_000694800
N
0.778
HPLM_0000123401
Haemonchus placei
HPLM_0000123401
N
0.824
L889_g22425
Steinernema feltiae
L889_g22425
N
0.857
OESDEN_19207
Oesophagostomum dentatum
OESDEN_19207
N
0.823
scaffold92-EXSNAP2012.31
Pristionchus exspectatus
scaffold92-EXSNAP2012.31
N
0.825
TCNE_0001076801
Toxocara canis
TCNE_0001076801
N
0.789
TELCIR_04239
Teladorsagia circumcincta
TELCIR_04239
N
0.824