CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L889_g11570
(
Steinernema feltiae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L889_g11570
T309043_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-49
M02413_2.00
Caenorhabditis elegans
NNNNWNHAN
NTDNWNNNN
PBM
Weirauch et al.(2014)
pTH5891
0.874
0.514
nhr-1
M00686_2.00
Caenorhabditis elegans
ARTGATCA
TGATCAYT
PBM
Narasimhan et al.(2015)
pTH9322
0.837
0.486
nhr-34
M00690_2.00
Caenorhabditis elegans
NNNNDHYRNN
NNYRDHNNNN
PBM
Narasimhan et al.(2015)
pTH9907
0.745
0.557
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L889_g11570.t1
Nuclear receptor
89
158
MVCVVCGDAATGRHYGTVACNGCKGFFRRTIRRQYTYKCRFRDDCDIKIHTRAVCRACRYRRCLENGMKV
Links
Other
Nuclear receptor
family TFs
Other
Steinernema feltiae
TFs
222 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
anac047
Arabidopsis lyrata
fgenesh2_kg.3__367__AT3G04070.1
I
NAC047
Arabidopsis thaliana
AT3G04070
D
Bostr.2570s0301
Boechera stricta
Bostr.2570s0301
I
Bo1g152220
Brassica oleracea
Bo1g152220
I
Bra031949
Brassica rapa
Bra031949
I
Bra040152
Brassica rapa
Bra040152
I
Cagra.2026s0001
Capsella grandiflora
Cagra.2026s0001
I
Carubv10014000m.g
Capsella rubella
Carubv10014000m.g
I
Ciclev10020717m.g
Citrus clementina
Ciclev10020717m.g
I
orange1.1g017665m.g
Citrus sinensis
orange1.1g017665m.g
I
Thhalv10021011m.g
Eutrema salsugineum
Thhalv10021011m.g
I
GLYMA12G22790
Glycine max
GLYMA12G22790
I
Gorai.013G191800
Gossypium raimondii
Gorai.013G191800
I
Gorai.007G267900
Gossypium raimondii
Gorai.007G267900
I
Lus10003269.g
Linum usitatissimum
Lus10003269.g
I
Lus10006547.g
Linum usitatissimum
Lus10006547.g
I
Lus10042531.g
Linum usitatissimum
Lus10042531.g
I
MDP0000674514
Malus domestica
MDP0000674514
I
cassava35701.valid.m1
Manihot esculenta
cassava35701.valid.m1
I
cassava22631.valid.m1
Manihot esculenta
cassava22631.valid.m1
I
POPTR_0013s05080
Populus trichocarpa
POPTR_0013s05080
I
POPTR_0019s04690
Populus trichocarpa
POPTR_0019s04690
I
29950.m001173
Ricinus communis
29950.m001173
I
SapurV1A.0867s0160
Salix purpurea
SapurV1A.0867s0160
I
SapurV1A.1058s0080
Salix purpurea
SapurV1A.1058s0080
I
SapurV1A.1196s0040
Salix purpurea
SapurV1A.1196s0040
I
SapurV1A.2115s0010
Salix purpurea
SapurV1A.2115s0010
I
TCM_026030
Theobroma cacao
TCM_026030
I
anac047
Vitis vinifera
VIT_08s0007g07670
I