CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TRE_0000921601
(
Trichobilharzia regenti
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
TRE_0000921601
T313002_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.704
0.704
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.704
0.704
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.704
0.704
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.704
0.704
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.704
0.704
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.704
0.704
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.704
0.704
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.704
0.704
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.704
0.704
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.704
0.704
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.704
0.704
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.704
0.704
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.704
0.704
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.704
0.704
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.704
0.704
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.704
0.704
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.704
0.704
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.704
0.704
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.704
0.704
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.704
0.704
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TRE_0000921601-mRNA-1
Paired box
10
134
GHSGVNQLGGMFVNGRPLPDTTRQRIIELAHSGARPCDISRILQVSNGCVSKILCRYYETGSIRPKAIGGSKPRVATSAVVTKIDIYKRECPSIFAWEIRDRLLQEGVCTPDNIPSVSLCLDMLI
Links
Other
Paired box
family TFs
Other
Trichobilharzia regenti
TFs
156 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ECPE_0000273501
Echinostoma caproni
ECPE_0000273501
I
0.912
ECPE_0001376401
Echinostoma caproni
ECPE_0001376401
I
0.895
A_03128
Schistosoma haematobium
A_03128
I
0.888
D915_05709
Fasciola hepatica
D915_05709
I
0.888
Sjc_0004220
Schistosoma japonicum
Sjc_0004220
I
0.880
SCUD_0000535601
Schistosoma curassoni
SCUD_0000535601
I
0.880
pax6a
Danio rerio
ENSDARG00000103379
I
0.879
DILT_0000442801
Diphyllobothrium latum
DILT_0000442801
I
0.856
SSLN_0001115101
Schistocephalus solidus
SSLN_0001115101
I
0.856
Ocbimv22011111m.g
Octopus bimaculoides
Ocbimv22011111m.g
I
0.848
pax6b
Gasterosteus aculeatus
ENSGACG00000016030
I
0.840
Pax6
Mus musculus
ENSMUSG00000027168
D
0.832
PHUM217120
Pediculus humanus
PHUM217120
I
0.832
nRc.2.0.1.g00894
Romanomermis culicivorax
nRc.2.0.1.g00894
I
0.832
CLEC008733
Cimex lectularius
CLEC008733
I
0.830
pax6b
Danio rerio
ENSDARG00000045936
I
0.824
DAPPUDRAFT_122807
Daphnia pulex
DAPPUDRAFT_122807
I
0.824
KGM_02181
Danaus plexippus
KGM_02181
I
0.824
RPRC003362
Rhodnius prolixus
RPRC003362
I
0.824
SINV17241
Solenopsis invicta
SINV17241
I
0.824
Cflo_05394--XP_001120031.1_APIME
Camponotus floridanus
Cflo_05394--XP_001120031.1_APIME
I
0.824
ACEP24464
Atta cephalotes
ACEP24464
I
0.816
HMEL009702
Heliconius melpomene
HMEL009702
I
0.816
RPRC001429
Rhodnius prolixus
RPRC001429
I
0.816
ACEP20912
Atta cephalotes
ACEP20912
N
0.808
CLEC008846
Cimex lectularius
CLEC008846
I
0.808
YQE_05107
Dendroctonus ponderosae
YQE_05107
I
0.800
LDEC008984
Leptinotarsa decemlineata
LDEC008984
I
0.800
BGLB007764
Biomphalaria glabrata
BGLB007764
I
0.800
HmN_000735200
Hymenolepis microstoma
HmN_000735200
N
0.800
TTAC_0000709401
Hydatigera taeniaeformis
TTAC_0000709401
I
0.800
SPU_006786
Strongylocentrotus purpuratus
SPU_006786
I
0.792
DILT_0000606101
Diphyllobothrium latum
DILT_0000606101
N
0.792
TASK_0000210301
Taenia asiatica
TASK_0000210301
I
0.792
TCLT_0000192601
Thelazia callipaeda
TCLT_0000192601
N
0.792
TsM_000804100
Taenia solium
TsM_000804100
I
0.792
BGIBMGA009432
Bombyx mori
BGIBMGA009432
I
0.784
AMAM010937
Anopheles maculatus
AMAM010937
I
0.784
ECANG7_07793
Echinococcus canadensis
ECANG7_07793
I
0.784
EmuJ_000389800
Echinococcus multilocularis
EmuJ_000389800
I
0.784
nRc.2.0.1.g30341
Romanomermis culicivorax
nRc.2.0.1.g30341
I
0.784
SMTD_0001015101
Schistosoma mattheei
SMTD_0001015101
N
0.784
SPER_0000208501
Spirometra erinaceieuropaei
SPER_0000208501
N
0.784
WUBG_13045
Wuchereria bancrofti
WUBG_13045
I
0.776
Bm14693
Brugia malayi
Bm14693
I
0.776
WBGene00241130
Onchocerca volvulus
WBGene00241130
I
0.776
EVEC_0000795701
Enterobius vermicularis
EVEC_0000795701
I
0.776
HDID_0000853801
Hymenolepis diminuta
HDID_0000853801
N
0.776
L893_g1041
Steinernema glaseri
L893_g1041
I
0.776
nAv.1.0.1.g05236
Acanthocheilonema viteae
nAv.1.0.1.g05236
I
0.776
nDi.2.2.2.g03678
Dirofilaria immitis
nDi.2.2.2.g03678
I
0.776
NECAME_04524
Necator americanus
NECAME_04524
I
0.776
nOo.2.0.1.g04580
Onchocerca ochengi
nOo.2.0.1.g04580
I
0.776
TELCIR_00311
Teladorsagia circumcincta
TELCIR_00311
I
0.776
L596_g12356
Steinernema carpocapsae
L596_g12356
I
0.768
AATE019182
Anopheles atroparvus
AATE019182
I
0.768
ACOM023323
Anopheles coluzzii
ACOM023323
I
0.768
L889_g29910
Steinernema feltiae
L889_g29910
I
0.768
PXEA_0001769401
Protopolystoma xenopodis
PXEA_0001769401
N
0.768
ALUE_0000749601
Ascaris lumbricoides
ALUE_0000749601
N
0.760
BTMF_0000869901
Brugia timori
BTMF_0000869901
N
0.760
EEL_0000889701
Elaeophora elaphi
EEL_0000889701
N
0.760
nLs.2.1.2.g01338
Litomosoides sigmodontis
nLs.2.1.2.g01338
N
0.760
OFLC_0001383501
Onchocerca flexuosa
OFLC_0001383501
I
0.760
LOAG_04187
Loa loa
LOAG_04187
N
0.752
DME_0000186001
Dracunculus medinensis
DME_0000186001
N
0.752
Ppa-vab-3
Pristionchus pacificus
PPA03442
I
0.744
ASU_08112
Ascaris suum
ASU_08112
N
0.744
PEQ_0001140301
Parascaris equorum
PEQ_0001140301
N
0.744
scaffold478-EXSNAP2012.12
Pristionchus exspectatus
scaffold478-EXSNAP2012.12
I
0.744
CBG04481
Caenorhabditis briggsae
CBG04481
I
0.736
SPU_014539
Strongylocentrotus purpuratus
SPU_014539
I
0.720
Sakowv30025789m.g
Saccoglossus kowalevskii
Sakowv30025789m.g
I
0.720
ACYPI000633
Acyrthosiphon pisum
ACYPI000633
I
0.712
CGI_10024166
Crassostrea gigas
CGI_10024166
I
0.712
pax2a
Danio rerio
ENSDARG00000028148
I
0.712
pax5
Danio rerio
ENSDARG00000037383
I
0.712
pax2a
Gasterosteus aculeatus
ENSGACG00000008391
I
0.712
ENSGMOG00000012561
Gadus morhua
ENSGMOG00000012561
I
0.712
ENSONIG00000018496
Oreochromis niloticus
ENSONIG00000018496
I
0.712
ENSPFOG00000011719
Poecilia formosa
ENSPFOG00000011719
I
0.712
ENSPFOG00000013202
Poecilia formosa
ENSPFOG00000013202
I
0.712
Pax5
Rattus norvegicus
ENSRNOG00000024729
I
0.712
pax5
Tetraodon nigroviridis
ENSTNIG00000005085
I
0.712
pax5
Takifugu rubripes
ENSTRUG00000003227
I
0.712
pax2a
Takifugu rubripes
ENSTRUG00000008891
I
0.712
ENSXMAG00000012680
Xiphophorus maculatus
ENSXMAG00000012680
I
0.712
MCINX012239
Melitaea cinxia
MCINX012239
I
0.712
PAX2
Loxodonta africana
ENSLAFG00000002388
I
0.710
BGIBMGA013358
Bombyx mori
BGIBMGA013358
I
0.710
PAX2
Homo sapiens
ENSG00000075891
D
0.704
Pax2
Rattus norvegicus
ENSRNOG00000014253
I
0.704
pax2.L
Xenopus laevis
XB-GENE-486805
I
0.704
ENSACAG00000011033
Anolis carolinensis
ENSACAG00000011033
I
0.704
ENSAMEG00000010127
Ailuropoda melanoleuca
ENSAMEG00000010127
I
0.704
ENSAMXG00000012274
Astyanax mexicanus
ENSAMXG00000012274
I
0.704
PAX5
Bos taurus
ENSBTAG00000012498
I
0.704
PAX5
Canis familiaris
ENSCAFG00000002357
I
0.704
PAX5
Choloepus hoffmanni
ENSCHOG00000003521
I
0.704
PAX5
Callithrix jacchus
ENSCJAG00000010379
I
0.704
PAX5
Cavia porcellus
ENSCPOG00000009987
I
0.704
ENSCSAG00000010751
Chlorocebus sabaeus
ENSCSAG00000010751
I
0.704
pax2b
Danio rerio
ENSDARG00000032578
D
0.704
Pax5
Dipodomys ordii
ENSDORG00000015818
I
0.704
PAX5
Equus caballus
ENSECAG00000000551
I
0.704
PAX5
Erinaceus europaeus
ENSEEUG00000012531
I
0.704
PAX5
Echinops telfairi
ENSETEG00000002360
I
0.704
ENSFALG00000012983
Ficedula albicollis
ENSFALG00000012983
I
0.704
PAX5
Felis catus
ENSFCAG00000001628
I
0.704
PAX5
Homo sapiens
ENSG00000196092
D
0.704
pax2b
Gasterosteus aculeatus
ENSGACG00000002432
I
0.704
pax5
Gasterosteus aculeatus
ENSGACG00000016112
I
0.704
Pax-2
Gallus gallus
ENSGALG00000005689
I
0.704
Pax5B
Gallus gallus
ENSGALG00000016431
D
0.704
PAX5
Gorilla gorilla
ENSGGOG00000003633
I
0.704
ENSLACG00000013159
Latimeria chalumnae
ENSLACG00000013159
I
0.704
PAX5
Loxodonta africana
ENSLAFG00000028851
I
0.704
PAX5
Microcebus murinus
ENSMICG00000017679
I
0.704
PAX5
Myotis lucifugus
ENSMLUG00000012652
I
0.704
PAX5
Monodelphis domestica
ENSMODG00000002720
I
0.704
ENSMPUG00000006012
Mustela putorius furo
ENSMPUG00000006012
I
0.704
Pax5
Mus musculus
ENSMUSG00000014030
D
0.704
ENSNLEG00000003664
Nomascus leucogenys
ENSNLEG00000003664
I
0.704
PAX5
Ornithorhynchus anatinus
ENSOANG00000007579
I
0.704
ENSOARG00000011518
Ovis aries
ENSOARG00000011518
I
0.704
PAX5
Oryctolagus cuniculus
ENSOCUG00000012281
I
0.704
ENSOGAG00000004773
Otolemur garnettii
ENSOGAG00000004773
I
0.704
ENSONIG00000008952
Oreochromis niloticus
ENSONIG00000008952
I
0.704
ENSONIG00000016065
Oreochromis niloticus
ENSONIG00000016065
I
0.704
PAX5
Ochotona princeps
ENSOPRG00000000734
I
0.704
pax5
Oryzias latipes
ENSORLG00000005326
I
0.704
ENSPANG00000025475
Papio anubis
ENSPANG00000025475
I
0.704
PAX5
Procavia capensis
ENSPCAG00000004660
I
0.704
ENSPFOG00000003702
Poecilia formosa
ENSPFOG00000003702
I
0.704
ENSPPYG00000019064
Pongo abelii
ENSPPYG00000019064
I
0.704
PAX8
Pan troglodytes
ENSPTRG00000012380
I
0.704
PAX5
Pan troglodytes
ENSPTRG00000020936
I
0.704
PAX5
Pteropus vampyrus
ENSPVAG00000000054
I
0.704
ENSSSCG00000005345
Sus scrofa
ENSSSCG00000005345
I
0.704
ENSSTOG00000024354
Ictidomys tridecemlineatus
ENSSTOG00000024354
I
0.704
PAX5
Taeniopygia guttata
ENSTGUG00000007215
I
0.704
pax2b
Takifugu rubripes
ENSTRUG00000011987
I
0.704
ENSTSYG00000001117
Tarsius syrichta
ENSTSYG00000001117
I
0.704
ENSXMAG00000003038
Xiphophorus maculatus
ENSXMAG00000003038
I
0.704
KGM_12316
Danaus plexippus
KGM_12316
I
0.704
Aan_R002178
Calypte anna
Aan_R002178
I
0.704
Afo_R005136
Aptenodytes forsteri
Afo_R005136
I
0.704
Brh_R001926
Buceros rhinoceros
Brh_R001926
I
0.704
ENSP00000350844-D1
Bos grunniens
ENSP00000350844-D1
I
0.704
ENSP00000350844
Macaca fascicularis
ENSP00000350844
I
0.704
Gfo_R013093
Geospiza fortis
Gfo_R013093
I
0.704
Myotis_brandtii_PAX5_10017827
Myotis brandtii
Myotis_brandtii_PAX5_10017827
I
0.704
Ogr18043
Ophisaurus gracilis
Ogr18043
I
0.704
Pvit_15554
Pogona vitticeps
Pvit_15554
I
0.704
pax2
Xenopus tropicalis
XB-GENE-486801
D
0.704
XP_002935920
Xenopus tropicalis
XP_002935920
I
0.704