Bo7g078820 (Brassica oleracea)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04640 (PLATZ) IPR006734 Bo7g078820 T315252_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G01818
M07247_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT2G01818_col_a 		0.910 0.910
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g078820.1 PLATZ 67 144

Links

Other PLATZ family TFs
Other Brassica oleracea TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g134600 Brassica oleracea Bo2g134600 I 0.974
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.974
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.974
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.974
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.974
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.962
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.910
PK02661.1 Cannabis sativa PK02661.1 I 0.756
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.744
POPTR_0008s13660 Populus trichocarpa POPTR_0008s13660 I 0.731
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.731
29968.m000644 Ricinus communis 29968.m000644 I 0.731
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.731
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.731
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.731
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.731
TCM_011266 Theobroma cacao TCM_011266 I 0.718
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.718
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.718
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.718
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.718
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.705
Pm005894 Prunus mume Pm005894 I 0.705
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.705
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.705
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.705