POPTR_0008s13660 (Populus trichocarpa)
PLATZ

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04640 (PLATZ) IPR006734 POPTR_0008s13660 T315639_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G01818
M07247_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT2G01818_col_a 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s13660.1 PLATZ 65 142

Links

Other PLATZ family TFs
Other Populus trichocarpa TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0010s11410 Populus trichocarpa POPTR_0010s11410 I 0.974
SapurV1A.0015s0650 Salix purpurea SapurV1A.0015s0650 I 0.974
SapurV1A.0055s0220 Salix purpurea SapurV1A.0055s0220 I 0.936
cassava20325.m1 Manihot esculenta cassava20325.m1 I 0.910
29968.m000644 Ricinus communis 29968.m000644 I 0.897
MDP0000290118 Malus domestica MDP0000290118 I 0.897
PRUPE_ppa011075mg Prunus persica PRUPE_ppa011075mg I 0.885
Pm005894 Prunus mume Pm005894 I 0.885
Gorai.005G152700 Gossypium raimondii Gorai.005G152700 I 0.859
TCM_011266 Theobroma cacao TCM_011266 I 0.846
Eucgr.G02080 Eucalyptus grandis Eucgr.G02080 I 0.833
Gorai.008G170500 Gossypium raimondii Gorai.008G170500 I 0.821
Gorai.013G029900 Gossypium raimondii Gorai.013G029900 I 0.821
Lus10013242.g Linum usitatissimum Lus10013242.g I 0.808
PK02661.1 Cannabis sativa PK02661.1 I 0.808
cassava40347.m1 Manihot esculenta cassava40347.m1 N 0.795
Ciclev10016611m.g Citrus clementina Ciclev10016611m.g N 0.795
evm.TU.supercontig_2.160 Carica papaya evm.TU.supercontig_2.160 I 0.795
Lus10030763.g Linum usitatissimum Lus10030763.g I 0.795
orange1.1g027579m.g Citrus sinensis orange1.1g027579m.g N 0.795
VIT_01s0011g06060 Vitis vinifera VIT_01s0011g06060 N 0.769
AT2G01818 Arabidopsis thaliana AT2G01818 D 0.756
PGSC0003DMG400029466 Solanum tuberosum PGSC0003DMG400029466 N 0.756
Solyc04g008090.2 Solanum lycopersicum Solyc04g008090.2 N 0.756
Cla005897 Citrullus lanatus Cla005897 N 0.756
Cucsa.012070 Cucumis sativus Cucsa.012070 N 0.756
fgenesh2_kg.5__89__AT2G01818.1 Arabidopsis lyrata fgenesh2_kg.5__89__AT2G01818.1 I 0.744
Bostr.0556s0005 Boechera stricta Bostr.0556s0005 I 0.744
Cagra.2235s0037 Capsella grandiflora Cagra.2235s0037 I 0.744
Carubv10017978m.g Capsella rubella Carubv10017978m.g I 0.744
Thhalv10005480m.g Eutrema salsugineum Thhalv10005480m.g I 0.744
Bo7g078820 Brassica oleracea Bo7g078820 I 0.731
Lus10028998.g Linum usitatissimum Lus10028998.g N 0.718
Bo2g134600 Brassica oleracea Bo2g134600 I 0.705
Lus10003680.g Linum usitatissimum Lus10003680.g N 0.705