CGI_10006904 (Crassostrea gigas)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 CGI_10006904 T318066_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.703 0.560
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.703 0.560
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.703 0.560
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.703 0.560
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.683 0.467
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.683 0.467
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.683 0.467
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.683 0.467
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.683 0.467
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.683 0.467
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.683 0.467
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.683 0.467
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.683 0.467
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.683 0.467
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.683 0.467
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.683 0.467
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.683 0.467
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.683 0.467
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.683 0.467
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC29702 RFX 126 200

Links

Other RFX family TFs
Other Crassostrea gigas TFs

218 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LotgiG138119 Lottia gigantea LotgiG138119 I 0.721
Smp_040350 Schistosoma mansoni Smp_040350 I 0.715
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.715
A_01977 Schistosoma haematobium A_01977 I 0.715
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.715
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.715
TsM_000553100 Taenia solium TsM_000553100 I 0.715
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.715
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.711
RFX7 Danio rerio ENSDARG00000103691 I 0.711
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.711
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.711
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.711
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.711
RFX7 Oryzias latipes ENSORLG00000005342 I 0.711
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.711
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.711
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.711
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.711
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.710
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.710
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.710
rfx7 Oryzias latipes ENSORLG00000008583 I 0.706
csin102559 Clonorchis sinensis csin102559 I 0.706
T265_11740 Opisthorchis viverrini T265_11740 I 0.706
rfx7 Danio rerio ENSDARG00000077237 I 0.705
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.705
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.705
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.704
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.703
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.703
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.703
RFX7 Bos taurus ENSBTAG00000000565 I 0.703
RFX7 Canis familiaris ENSCAFG00000016029 I 0.703
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.703
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.703
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.703
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.703
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.703
RFX7 Homo sapiens ENSG00000181827 D 0.703
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.703
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.703
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.703
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.703
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.703
Rfx7 Mus musculus ENSMUSG00000037674 D 0.703
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.703
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.703
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.703
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.703
RFX7 Procavia capensis ENSPCAG00000004974 I 0.703
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.703
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.703
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.703
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.703
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.703
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.703
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.703
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.703
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.702
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.701
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.701
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.701
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.701
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.700
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.700
RFX7 Equus caballus ENSECAG00000002379 I 0.699
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.699
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.699
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.699
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.699
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.699
Aan_R011989 Calypte anna Aan_R011989 I 0.699
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.699
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.699
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.699
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.698
RFX7 Sorex araneus ENSSARG00000010801 I 0.698
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.698
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.698
RFX7 Felis catus ENSFCAG00000029408 I 0.697
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.697
ISCW001129 Ixodes scapularis ISCW001129 I 0.697
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.695
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.694
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.693
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.693
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.691
RFX7 Echinops telfairi ENSETEG00000015037 I 0.690
ACEP24602 Atta cephalotes ACEP24602 I 0.689
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.689
GB49419 Apis mellifera GB49419 I 0.689
SINV24627 Solenopsis invicta SINV24627 I 0.689
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.689
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.689
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.689
CapteG131555 Capitella teleta CapteG131555 I 0.688
NV23037 Nasonia vitripennis NV23037 I 0.688
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.688
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.686
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.686
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.686
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.685
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.685
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.685
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.685
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.685
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.685
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.684
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.684
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.684
Rfx5 Mus musculus ENSMUSG00000005774 I 0.684
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.684
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.684
L798_03377 Zootermopsis nevadensis L798_03377 I 0.684
PHUM035280 Pediculus humanus PHUM035280 I 0.684
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.684
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.684
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.683
RFX5 Bos taurus ENSBTAG00000017580 I 0.683
RFX5 Canis familiaris ENSCAFG00000012661 I 0.683
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.683
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.683
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.683
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.683
RFX5 Equus caballus ENSECAG00000024774 I 0.683
RFX5 Echinops telfairi ENSETEG00000013503 I 0.683
RFX5 Felis catus ENSFCAG00000005568 I 0.683
RFX5 Homo sapiens ENSG00000143390 D 0.683
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.683
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.683
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.683
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.683
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.683
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.683
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.683
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.683
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.683
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.683
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.683
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.683
RFX5 Sorex araneus ENSSARG00000000750 I 0.683
RFX5 Sus scrofa ENSSSCG00000006625 I 0.683
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.683
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.683
TC008959 Tribolium castaneum TC008959 I 0.683
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.683
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.683
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.682
rfx5 Danio rerio ENSDARG00000063258 I 0.682
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.682
RFX5 Gallus gallus ENSGALG00000000836 I 0.681
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.681
D915_00887 Fasciola hepatica D915_00887 I 0.681
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.681
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.680
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.679
RFX5 Procavia capensis ENSPCAG00000011056 I 0.679
HMEL011744 Heliconius melpomene HMEL011744 I 0.679
MCINX003210 Melitaea cinxia MCINX003210 I 0.679
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.679
KGM_16732 Danaus plexippus KGM_16732 I 0.678
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.678
AFAF011654 Anopheles farauti AFAF011654 I 0.678
ADAC008404 Anopheles darlingi ADAC008404 I 0.676
AGAP013226 Anopheles gambiae AGAP013226 I 0.676
CG9727 Drosophila melanogaster FBgn0037445 I 0.676
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.676
GG10435 Drosophila erecta FBgn0102744 I 0.676
GI24583 Drosophila mojavensis FBgn0147305 I 0.676
GL22063 Drosophila persimilis FBgn0159655 I 0.676
GM10553 Drosophila sechellia FBgn0165499 I 0.676
GD19544 Drosophila simulans FBgn0191039 I 0.676
GJ22650 Drosophila virilis FBgn0209754 I 0.676
GK13786 Drosophila willistoni FBgn0215794 I 0.676
GE24099 Drosophila yakuba FBgn0241238 I 0.676
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.676
AALB008384 Anopheles albimanus AALB008384 I 0.676
AARA004226 Anopheles arabiensis AARA004226 I 0.676
AATE016751 Anopheles atroparvus AATE016751 I 0.676
ACHR008891 Anopheles christyi ACHR008891 I 0.676
ACOM036649 Anopheles coluzzii ACOM036649 I 0.676
ACUA017169 Anopheles culicifacies ACUA017169 I 0.676
ADIR010232 Anopheles dirus ADIR010232 I 0.676
AEPI006624 Anopheles epiroticus AEPI006624 I 0.676
AFUN011072 Anopheles funestus AFUN011072 I 0.676
AMEC002251 Anopheles melas AMEC002251 I 0.676
AMEM009524 Anopheles merus AMEM009524 I 0.676
AMIN003942 Anopheles minimus AMIN003942 I 0.676
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.676
ASIS020285 Anopheles sinensis ASIS020285 I 0.676
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.676
GF16654 Drosophila ananassae FBgn0093675 I 0.675
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.675
MDOA009335 Musca domestica MDOA009335 I 0.675
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.674
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.674
GH18082 Drosophila grimshawi FBgn0125550 I 0.674
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.674
LCUP014592 Lucilia cuprina LCUP014592 I 0.674
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.673
AAEL013752 Aedes aegypti AAEL013752 I 0.673
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.673
CLEC011984 Cimex lectularius CLEC011984 I 0.670
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.669
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.669
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.668
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.667
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.666
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.663
Aan_R010941 Calypte anna Aan_R010941 I 0.663
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.663
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.660
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.660
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.659
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.659
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.655
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.655