ENSFALG00000010929 (Ficedula albicollis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSFALG00000010929 T318233_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.762 0.848
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.762 0.848
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.762 0.848
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.762 0.848
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.762 0.848
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.762 0.848
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.762 0.848
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.762 0.848
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.762 0.848
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.762 0.848
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.762 0.848
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.762 0.848
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.762 0.848
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.762 0.848
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.762 0.848
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.720 0.696
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.720 0.696
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.720 0.696
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.720 0.696
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSFALP00000011408 RFX 89 168

Links

Other RFX family TFs
Other Ficedula albicollis TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.801
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.787
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.786
RFX5 Gallus gallus ENSGALG00000000836 I 0.782
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.781
RFX5 Procavia capensis ENSPCAG00000011056 I 0.779
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.777
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.777
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.774
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.774
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.774
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.774
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.772
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.772
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.765
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.765
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.764
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.764
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.764
RFX5 Echinops telfairi ENSETEG00000013503 I 0.763
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.763
RFX5 Sorex araneus ENSSARG00000000750 I 0.763
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.763
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.763
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.763
RFX5 Bos taurus ENSBTAG00000017580 I 0.762
RFX5 Canis familiaris ENSCAFG00000012661 I 0.762
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.762
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.762
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.762
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.762
RFX5 Equus caballus ENSECAG00000024774 I 0.762
RFX5 Felis catus ENSFCAG00000005568 I 0.762
RFX5 Homo sapiens ENSG00000143390 D 0.762
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.762
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.762
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.762
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.762
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.762
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.762
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.762
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.762
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.762
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.762
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.762
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.762
RFX5 Sus scrofa ENSSSCG00000006625 I 0.762
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.762
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.762
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.762
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.762
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.760
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.760
Rfx5 Mus musculus ENSMUSG00000005774 I 0.760
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.760
Aan_R010941 Calypte anna Aan_R010941 I 0.760
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.759
rfx5 Danio rerio ENSDARG00000063258 I 0.759
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.759
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.751
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.724
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.724
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.722
RFX7 Danio rerio ENSDARG00000103691 I 0.722
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.722
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.722
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.722
RFX7 Oryzias latipes ENSORLG00000005342 I 0.722
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.722
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.722
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.720
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.720
RFX7 Bos taurus ENSBTAG00000000565 I 0.720
RFX7 Canis familiaris ENSCAFG00000016029 I 0.720
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.720
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.720
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.720
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.720
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.720
RFX7 Felis catus ENSFCAG00000029408 I 0.720
RFX7 Homo sapiens ENSG00000181827 D 0.720
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.720
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.720
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.720
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.720
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.720
Rfx7 Mus musculus ENSMUSG00000037674 D 0.720
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.720
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.720
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.720
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.720
RFX7 Procavia capensis ENSPCAG00000004974 I 0.720
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.720
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.720
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.720
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.720
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.720
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.720
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.720
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.719
rfx7 Danio rerio ENSDARG00000077237 I 0.719
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.719
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.718
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.717
RFX7 Equus caballus ENSECAG00000002379 I 0.716
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.716
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.716
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.716
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.716
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.716
Aan_R011989 Calypte anna Aan_R011989 I 0.716
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.716
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.716
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.716
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.715
RFX7 Sorex araneus ENSSARG00000010801 I 0.715
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.715
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.714
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.712
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.712
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.708
csin102559 Clonorchis sinensis csin102559 I 0.708
T265_11740 Opisthorchis viverrini T265_11740 I 0.708
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.707
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.707
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.707
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.706
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.706
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.705
RFX7 Echinops telfairi ENSETEG00000015037 I 0.704
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.704
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.703
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.703
rfx7 Oryzias latipes ENSORLG00000008583 I 0.702
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.700
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.700
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.699
Smp_040350 Schistosoma mansoni Smp_040350 I 0.698
A_01977 Schistosoma haematobium A_01977 I 0.698
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.698
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.698
TsM_000553100 Taenia solium TsM_000553100 I 0.698
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.698
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.697
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.697
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.697
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.696
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.696
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.695
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.691
CapteG131555 Capitella teleta CapteG131555 I 0.689
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.688
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.686
L798_03377 Zootermopsis nevadensis L798_03377 I 0.686
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.685
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.685
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.685
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.684
ACEP24602 Atta cephalotes ACEP24602 I 0.683
GB49419 Apis mellifera GB49419 I 0.683
LotgiG138119 Lottia gigantea LotgiG138119 I 0.683
PHUM035280 Pediculus humanus PHUM035280 I 0.683
SINV24627 Solenopsis invicta SINV24627 I 0.683
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.683
TC008959 Tribolium castaneum TC008959 I 0.681
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.680
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.680
NV23037 Nasonia vitripennis NV23037 I 0.680
HMEL011744 Heliconius melpomene HMEL011744 I 0.678
MCINX003210 Melitaea cinxia MCINX003210 I 0.678
MDOA009335 Musca domestica MDOA009335 I 0.678
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.677
KGM_16732 Danaus plexippus KGM_16732 I 0.677
LCUP014592 Lucilia cuprina LCUP014592 I 0.677
ADAC008404 Anopheles darlingi ADAC008404 I 0.675
AGAP013226 Anopheles gambiae AGAP013226 I 0.675
CG9727 Drosophila melanogaster FBgn0037445 I 0.675
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.675
GF16654 Drosophila ananassae FBgn0093675 I 0.675
GG10435 Drosophila erecta FBgn0102744 I 0.675
GH18082 Drosophila grimshawi FBgn0125550 I 0.675
GI24583 Drosophila mojavensis FBgn0147305 I 0.675
GL22063 Drosophila persimilis FBgn0159655 I 0.675
GM10553 Drosophila sechellia FBgn0165499 I 0.675
GD19544 Drosophila simulans FBgn0191039 I 0.675
GJ22650 Drosophila virilis FBgn0209754 I 0.675
GK13786 Drosophila willistoni FBgn0215794 I 0.675
GE24099 Drosophila yakuba FBgn0241238 I 0.675
AALB008384 Anopheles albimanus AALB008384 I 0.675
AARA004226 Anopheles arabiensis AARA004226 I 0.675
AATE016751 Anopheles atroparvus AATE016751 I 0.675
ACHR008891 Anopheles christyi ACHR008891 I 0.675
ACOM036649 Anopheles coluzzii ACOM036649 I 0.675
ACUA017169 Anopheles culicifacies ACUA017169 I 0.675
ADIR010232 Anopheles dirus ADIR010232 I 0.675
AEPI006624 Anopheles epiroticus AEPI006624 I 0.675
AFAF011654 Anopheles farauti AFAF011654 I 0.675
AFUN011072 Anopheles funestus AFUN011072 I 0.675
AMEC002251 Anopheles melas AMEC002251 I 0.675
AMEM009524 Anopheles merus AMEM009524 I 0.675
AMIN003942 Anopheles minimus AMIN003942 I 0.675
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.675
ASIS020285 Anopheles sinensis ASIS020285 I 0.675
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.675
AAEL013752 Aedes aegypti AAEL013752 I 0.672
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.671
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.671
CLEC011984 Cimex lectularius CLEC011984 I 0.671
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.668
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.667
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.666
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.665
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.665
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.665
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.664
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.659
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.656
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.655
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.655
ISCW001129 Ixodes scapularis ISCW001129 I 0.655
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.654
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.653
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.652
D915_00887 Fasciola hepatica D915_00887 I 0.652
TriadG51992 Trichoplax adhaerens TriadG51992 I 0.651
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.651