ENSLOCG00000008459 (Lepisosteus oculatus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSLOCG00000008459 T318302_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.739 0.759
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.739 0.759
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.739 0.759
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.739 0.759
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.739 0.759
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.739 0.759
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.739 0.759
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.739 0.759
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.739 0.759
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.739 0.759
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.739 0.759
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.739 0.759
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.739 0.759
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.739 0.759
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.739 0.759
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.715 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.715 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.715 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.715 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000010291 RFX 88 169
ENSLOCP00000010306 RFX 88 166

Links

Other RFX family TFs
Other Lepisosteus oculatus TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.793
rfx5 Danio rerio ENSDARG00000063258 I 0.793
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.792
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.792
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.790
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.790
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.788
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.777
RFX5 Gallus gallus ENSGALG00000000836 I 0.763
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.763
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.760
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.760
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.759
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.759
RFX5 Procavia capensis ENSPCAG00000011056 I 0.756
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.755
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.751
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.751
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.751
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.749
Aan_R010941 Calypte anna Aan_R010941 I 0.749
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.748
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.748
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.748
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.741
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.741
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.741
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.740
RFX5 Bos taurus ENSBTAG00000017580 I 0.739
RFX5 Canis familiaris ENSCAFG00000012661 I 0.739
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.739
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.739
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.739
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.739
RFX5 Equus caballus ENSECAG00000024774 I 0.739
RFX5 Echinops telfairi ENSETEG00000013503 I 0.739
RFX5 Felis catus ENSFCAG00000005568 I 0.739
RFX5 Homo sapiens ENSG00000143390 D 0.739
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.739
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.739
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.739
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.739
Rfx5 Mus musculus ENSMUSG00000005774 I 0.739
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.739
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.739
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.739
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.739
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.739
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.739
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.739
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.739
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.739
RFX5 Sorex araneus ENSSARG00000000750 I 0.739
RFX5 Sus scrofa ENSSSCG00000006625 I 0.739
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.739
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.739
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.739
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.739
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.735
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.735
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.720
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.719
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.719
RFX7 Danio rerio ENSDARG00000103691 I 0.719
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.719
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.719
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.719
RFX7 Oryzias latipes ENSORLG00000005342 I 0.719
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.719
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.716
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.715
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.715
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.715
RFX7 Bos taurus ENSBTAG00000000565 I 0.715
RFX7 Canis familiaris ENSCAFG00000016029 I 0.715
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.715
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.715
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.715
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.715
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.715
RFX7 Homo sapiens ENSG00000181827 D 0.715
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.715
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.715
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.715
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.715
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.715
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.715
Rfx7 Mus musculus ENSMUSG00000037674 D 0.715
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.715
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.715
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.715
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.715
RFX7 Procavia capensis ENSPCAG00000004974 I 0.715
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.715
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.715
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.715
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.715
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.715
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.715
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.715
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.715
rfx7 Danio rerio ENSDARG00000077237 I 0.714
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.714
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.713
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.713
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.713
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.711
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.711
RFX7 Equus caballus ENSECAG00000002379 I 0.710
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.710
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.710
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.710
Aan_R011989 Calypte anna Aan_R011989 I 0.710
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.710
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.710
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.710
RFX7 Felis catus ENSFCAG00000029408 I 0.709
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.709
RFX7 Sorex araneus ENSSARG00000010801 I 0.709
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.709
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.708
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.707
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.707
csin102559 Clonorchis sinensis csin102559 I 0.707
T265_11740 Opisthorchis viverrini T265_11740 I 0.707
rfx7 Oryzias latipes ENSORLG00000008583 I 0.706
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.706
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.706
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.705
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.702
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.702
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.701
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.701
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.701
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.700
RFX7 Echinops telfairi ENSETEG00000015037 I 0.698
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.697
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.697
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.696
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.696
Smp_040350 Schistosoma mansoni Smp_040350 I 0.696
A_01977 Schistosoma haematobium A_01977 I 0.696
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.696
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.695
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.695
TsM_000553100 Taenia solium TsM_000553100 I 0.695
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.695
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.694
CapteG131555 Capitella teleta CapteG131555 I 0.692
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.690
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.689
LotgiG138119 Lottia gigantea LotgiG138119 I 0.688
TC008959 Tribolium castaneum TC008959 I 0.688
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.687
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.686
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.686
HMEL011744 Heliconius melpomene HMEL011744 I 0.685
MCINX003210 Melitaea cinxia MCINX003210 I 0.685
PHUM035280 Pediculus humanus PHUM035280 I 0.685
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.684
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.684
KGM_16732 Danaus plexippus KGM_16732 I 0.684
ACEP24602 Atta cephalotes ACEP24602 I 0.683
GB49419 Apis mellifera GB49419 I 0.683
SINV24627 Solenopsis invicta SINV24627 I 0.683
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.683
L798_03377 Zootermopsis nevadensis L798_03377 I 0.680
NV23037 Nasonia vitripennis NV23037 I 0.680
CG9727 Drosophila melanogaster FBgn0037445 I 0.679
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.679
GG10435 Drosophila erecta FBgn0102744 I 0.679
GH18082 Drosophila grimshawi FBgn0125550 I 0.679
GI24583 Drosophila mojavensis FBgn0147305 I 0.679
GL22063 Drosophila persimilis FBgn0159655 I 0.679
GM10553 Drosophila sechellia FBgn0165499 I 0.679
GD19544 Drosophila simulans FBgn0191039 I 0.679
GJ22650 Drosophila virilis FBgn0209754 I 0.679
GK13786 Drosophila willistoni FBgn0215794 I 0.679
GE24099 Drosophila yakuba FBgn0241238 I 0.679
LCUP014592 Lucilia cuprina LCUP014592 I 0.679
MDOA009335 Musca domestica MDOA009335 I 0.679
GF16654 Drosophila ananassae FBgn0093675 I 0.678
ADAC008404 Anopheles darlingi ADAC008404 I 0.677
AGAP013226 Anopheles gambiae AGAP013226 I 0.677
AALB008384 Anopheles albimanus AALB008384 I 0.677
AARA004226 Anopheles arabiensis AARA004226 I 0.677
AATE016751 Anopheles atroparvus AATE016751 I 0.677
ACHR008891 Anopheles christyi ACHR008891 I 0.677
ACOM036649 Anopheles coluzzii ACOM036649 I 0.677
ACUA017169 Anopheles culicifacies ACUA017169 I 0.677
ADIR010232 Anopheles dirus ADIR010232 I 0.677
AEPI006624 Anopheles epiroticus AEPI006624 I 0.677
AFAF011654 Anopheles farauti AFAF011654 I 0.677
AFUN011072 Anopheles funestus AFUN011072 I 0.677
AMEC002251 Anopheles melas AMEC002251 I 0.677
AMEM009524 Anopheles merus AMEM009524 I 0.677
AMIN003942 Anopheles minimus AMIN003942 I 0.677
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.677
ASIS020285 Anopheles sinensis ASIS020285 I 0.677
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.677
AAEL013752 Aedes aegypti AAEL013752 I 0.676
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.675
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.675
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.675
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.674
CLEC011984 Cimex lectularius CLEC011984 I 0.674
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.673
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.668
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.668
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.667
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.667
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.663
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.663
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.663
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.662
ISCW001129 Ixodes scapularis ISCW001129 I 0.662
D915_00887 Fasciola hepatica D915_00887 I 0.658
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.658
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.657
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.657
PTSG_12063 Salpingoeca rosetta PTSG_12063 I 0.656
ACYPI002124 Acyrthosiphon pisum ACYPI002124 I 0.655
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.654
ACRE_029400 Acremonium chrysogenum ACRE_029400 I 0.653
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.653
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.653
CGI_10016120 Crassostrea gigas CGI_10016120 I 0.652
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.651
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.651
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.651
PV09_00065 Verruconis gallopava PV09_00065 I 0.651
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.651
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.650
BXY_1592600 Bursaphelenchus xylophilus BXY_1592600 I 0.650