ENSLOCG00000013505 (Lepisosteus oculatus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSLOCG00000013505 T318304_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.785 0.962
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.785 0.962
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.785 0.962
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.785 0.962
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.715 0.633
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.715 0.633
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.715 0.633
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.715 0.633
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.715 0.633
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.715 0.633
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.715 0.633
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.715 0.633
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.715 0.633
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.715 0.633
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.715 0.633
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.715 0.633
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.715 0.633
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.715 0.633
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.715 0.633
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000016649 RFX 98 176

Links

Other RFX family TFs
Other Lepisosteus oculatus TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.794
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.794
RFX7 Danio rerio ENSDARG00000103691 I 0.794
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.790
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.790
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.790
RFX7 Oryzias latipes ENSORLG00000005342 I 0.790
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.790
rfx7 Danio rerio ENSDARG00000077237 I 0.789
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.785
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.785
RFX7 Bos taurus ENSBTAG00000000565 I 0.785
RFX7 Canis familiaris ENSCAFG00000016029 I 0.785
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.785
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.785
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.785
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.785
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.785
RFX7 Homo sapiens ENSG00000181827 D 0.785
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.785
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.785
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.785
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.785
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.785
Rfx7 Mus musculus ENSMUSG00000037674 D 0.785
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.785
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.785
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.785
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.785
RFX7 Procavia capensis ENSPCAG00000004974 I 0.785
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.785
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.785
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.785
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.785
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.785
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.785
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.785
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.784
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.784
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.783
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.782
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.782
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.782
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.781
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.781
RFX7 Equus caballus ENSECAG00000002379 I 0.780
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.780
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.780
Aan_R011989 Calypte anna Aan_R011989 I 0.780
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.780
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.780
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.780
RFX7 Felis catus ENSFCAG00000029408 I 0.779
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.779
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.779
RFX7 Sorex araneus ENSSARG00000010801 I 0.779
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.779
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.777
rfx7 Oryzias latipes ENSORLG00000008583 I 0.773
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.773
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.770
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.770
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.770
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.770
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.770
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.767
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.767
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.767
RFX7 Echinops telfairi ENSETEG00000015037 I 0.765
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.765
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.761
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.728
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.725
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.724
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.724
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.723
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.723
csin102559 Clonorchis sinensis csin102559 I 0.723
T265_11740 Opisthorchis viverrini T265_11740 I 0.723
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.722
rfx5 Danio rerio ENSDARG00000063258 I 0.721
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.721
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.721
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.721
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.720
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.720
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.720
RFX5 Gallus gallus ENSGALG00000000836 I 0.719
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.719
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.718
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.718
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.717
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.717
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.716
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.716
RFX5 Bos taurus ENSBTAG00000017580 I 0.715
RFX5 Canis familiaris ENSCAFG00000012661 I 0.715
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.715
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.715
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.715
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.715
RFX5 Equus caballus ENSECAG00000024774 I 0.715
RFX5 Echinops telfairi ENSETEG00000013503 I 0.715
RFX5 Felis catus ENSFCAG00000005568 I 0.715
RFX5 Homo sapiens ENSG00000143390 D 0.715
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.715
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.715
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.715
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.715
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.715
Rfx5 Mus musculus ENSMUSG00000005774 I 0.715
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.715
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.715
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.715
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.715
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.715
RFX5 Procavia capensis ENSPCAG00000011056 I 0.715
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.715
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.715
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.715
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.715
RFX5 Sorex araneus ENSSARG00000000750 I 0.715
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.715
RFX5 Sus scrofa ENSSSCG00000006625 I 0.715
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.715
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.715
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.715
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.715
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.714
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.714
Smp_040350 Schistosoma mansoni Smp_040350 I 0.713
A_01977 Schistosoma haematobium A_01977 I 0.713
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.712
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.711
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.711
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.710
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.710
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.710
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.710
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.710
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.710
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.710
TsM_000553100 Taenia solium TsM_000553100 I 0.710
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.710
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.709
LotgiG138119 Lottia gigantea LotgiG138119 I 0.708
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.707
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.703
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.703
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.702
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.702
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.701
L798_03377 Zootermopsis nevadensis L798_03377 I 0.701
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.701
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.701
ACEP24602 Atta cephalotes ACEP24602 I 0.700
GB49419 Apis mellifera GB49419 I 0.700
SINV24627 Solenopsis invicta SINV24627 I 0.700
Aan_R010941 Calypte anna Aan_R010941 I 0.700
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.700
NV23037 Nasonia vitripennis NV23037 I 0.699
TC008959 Tribolium castaneum TC008959 I 0.695
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.695
CapteG131555 Capitella teleta CapteG131555 I 0.694
PHUM035280 Pediculus humanus PHUM035280 I 0.693
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.693
HMEL011744 Heliconius melpomene HMEL011744 I 0.692
MCINX003210 Melitaea cinxia MCINX003210 I 0.692
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.691
KGM_16732 Danaus plexippus KGM_16732 I 0.691
ADAC008404 Anopheles darlingi ADAC008404 I 0.690
AGAP013226 Anopheles gambiae AGAP013226 I 0.690
LCUP014592 Lucilia cuprina LCUP014592 I 0.690
AALB008384 Anopheles albimanus AALB008384 I 0.690
AARA004226 Anopheles arabiensis AARA004226 I 0.690
AATE016751 Anopheles atroparvus AATE016751 I 0.690
ACHR008891 Anopheles christyi ACHR008891 I 0.690
ACOM036649 Anopheles coluzzii ACOM036649 I 0.690
ACUA017169 Anopheles culicifacies ACUA017169 I 0.690
ADIR010232 Anopheles dirus ADIR010232 I 0.690
AEPI006624 Anopheles epiroticus AEPI006624 I 0.690
AFAF011654 Anopheles farauti AFAF011654 I 0.690
AFUN011072 Anopheles funestus AFUN011072 I 0.690
AMEC002251 Anopheles melas AMEC002251 I 0.690
AMEM009524 Anopheles merus AMEM009524 I 0.690
AMIN003942 Anopheles minimus AMIN003942 I 0.690
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.690
ASIS020285 Anopheles sinensis ASIS020285 I 0.690
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.690
MDOA009335 Musca domestica MDOA009335 I 0.690
RFX7 Callithrix jacchus ENSCJAG00000002163 I 0.689
RFX7 Gorilla gorilla ENSGGOG00000002118 I 0.689
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.689
ENSDORG00000004908 Dipodomys ordii ENSDORG00000004908 I 0.688
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.687
AAEL013752 Aedes aegypti AAEL013752 I 0.687
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.687
CG9727 Drosophila melanogaster FBgn0037445 I 0.687
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.687
GG10435 Drosophila erecta FBgn0102744 I 0.687
GH18082 Drosophila grimshawi FBgn0125550 I 0.687
GI24583 Drosophila mojavensis FBgn0147305 I 0.687
GL22063 Drosophila persimilis FBgn0159655 I 0.687
GM10553 Drosophila sechellia FBgn0165499 I 0.687
GD19544 Drosophila simulans FBgn0191039 I 0.687
GJ22650 Drosophila virilis FBgn0209754 I 0.687
GK13786 Drosophila willistoni FBgn0215794 I 0.687
GE24099 Drosophila yakuba FBgn0241238 I 0.687
RFX7 Sus scrofa ENSSSCG00000004603 I 0.686
GF16654 Drosophila ananassae FBgn0093675 I 0.686
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.686
ISCW001129 Ixodes scapularis ISCW001129 I 0.684
Tal_R011248 Tyto alba Tal_R011248 I 0.684
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.683
ENSSTOG00000027249 Ictidomys tridecemlineatus ENSSTOG00000027249 I 0.683
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.683
CLEC011984 Cimex lectularius CLEC011984 I 0.683
ENSPFOG00000003977 Poecilia formosa ENSPFOG00000003977 I 0.681
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.680
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.680
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.679
RFX7 Microcebus murinus ENSMICG00000000614 I 0.674
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.673
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.670
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.668
D915_00887 Fasciola hepatica D915_00887 I 0.664
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.664
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.663
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.656
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.656
DILT_0001462801 Diphyllobothrium latum DILT_0001462801 I 0.654
GPLIN_000191300 Globodera pallida GPLIN_000191300 I 0.653
LELG_03203 Lodderomyces elongisporus LELG_03203 I 0.652
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.651
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.650