RFX5 (Procavia capensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPCAG00000011056 T318442_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.780 0.975
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.780 0.975
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.780 0.975
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.780 0.975
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.780 0.975
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.780 0.975
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.780 0.975
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.780 0.975
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.780 0.975
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.780 0.975
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.780 0.975
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.780 0.975
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.780 0.975
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.780 0.975
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.780 0.975
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.633
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.633
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.633
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.633
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000010323 RFX 90 169

Links

Other RFX family TFs
Other Procavia capensis TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.791
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.790
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.790
RFX5 Gallus gallus ENSGALG00000000836 I 0.785
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.781
RFX5 Bos taurus ENSBTAG00000017580 I 0.780
RFX5 Canis familiaris ENSCAFG00000012661 I 0.780
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.780
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.780
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.780
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.780
RFX5 Equus caballus ENSECAG00000024774 I 0.780
RFX5 Felis catus ENSFCAG00000005568 I 0.780
RFX5 Homo sapiens ENSG00000143390 D 0.780
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.780
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.780
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.780
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.780
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.780
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.780
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.780
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.780
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.780
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.780
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.780
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.780
RFX5 Sus scrofa ENSSSCG00000006625 I 0.780
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.780
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.780
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.780
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.780
RFX5 Echinops telfairi ENSETEG00000013503 I 0.779
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.779
RFX5 Sorex araneus ENSSARG00000000750 I 0.779
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.779
Rfx5 Mus musculus ENSMUSG00000005774 I 0.778
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.778
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.778
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.778
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.776
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.776
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.776
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.775
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.775
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.766
Aan_R010941 Calypte anna Aan_R010941 I 0.763
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.762
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.761
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.761
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.760
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.759
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.759
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.759
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.759
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.758
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.756
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.755
rfx5 Danio rerio ENSDARG00000063258 I 0.755
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.754
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.753
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.716
RFX7 Danio rerio ENSDARG00000103691 I 0.716
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.716
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.716
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.716
RFX7 Oryzias latipes ENSORLG00000005342 I 0.716
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.716
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.715
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.715
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.713
RFX7 Felis catus ENSFCAG00000029408 I 0.712
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.712
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.712
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.711
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.711
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.710
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.710
RFX7 Bos taurus ENSBTAG00000000565 I 0.710
RFX7 Canis familiaris ENSCAFG00000016029 I 0.710
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.710
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.710
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.710
rfx7 Danio rerio ENSDARG00000077237 I 0.710
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.710
RFX7 Homo sapiens ENSG00000181827 D 0.710
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.710
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.710
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.710
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.710
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.710
Rfx7 Mus musculus ENSMUSG00000037674 D 0.710
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.710
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.710
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.710
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.710
RFX7 Procavia capensis ENSPCAG00000004974 I 0.710
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.710
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.710
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.710
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.710
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.710
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.710
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.710
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.709
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.709
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.709
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.707
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.707
RFX7 Equus caballus ENSECAG00000002379 I 0.705
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.705
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.705
Aan_R011989 Calypte anna Aan_R011989 I 0.705
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.705
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.705
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.705
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.704
RFX7 Sorex araneus ENSSARG00000010801 I 0.704
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.704
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.703
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.702
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.702
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.702
csin102559 Clonorchis sinensis csin102559 I 0.702
T265_11740 Opisthorchis viverrini T265_11740 I 0.702
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.701
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.701
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.700
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.700
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.697
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.697
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.697
rfx7 Oryzias latipes ENSORLG00000008583 I 0.696
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.695
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.694
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.694
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.692
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.692
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.692
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.691
Smp_040350 Schistosoma mansoni Smp_040350 I 0.691
A_01977 Schistosoma haematobium A_01977 I 0.691
RFX7 Echinops telfairi ENSETEG00000015037 I 0.690
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.690
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.690
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.690
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.690
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.690
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.690
TsM_000553100 Taenia solium TsM_000553100 I 0.690
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.690
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.689
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.688
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.688
CapteG131555 Capitella teleta CapteG131555 I 0.686
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.686
PHUM035280 Pediculus humanus PHUM035280 I 0.685
ACEP24602 Atta cephalotes ACEP24602 I 0.684
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.684
GB49419 Apis mellifera GB49419 I 0.684
L798_03377 Zootermopsis nevadensis L798_03377 I 0.684
SINV24627 Solenopsis invicta SINV24627 I 0.684
TC008959 Tribolium castaneum TC008959 I 0.684
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.684
NV23037 Nasonia vitripennis NV23037 I 0.681
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.681
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.681
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.679
LotgiG138119 Lottia gigantea LotgiG138119 I 0.679
HMEL011744 Heliconius melpomene HMEL011744 I 0.676
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.676
KGM_16732 Danaus plexippus KGM_16732 I 0.675
MCINX003210 Melitaea cinxia MCINX003210 I 0.675
AFAF011654 Anopheles farauti AFAF011654 I 0.675
LCUP014592 Lucilia cuprina LCUP014592 I 0.674
MDOA009335 Musca domestica MDOA009335 I 0.674
ADAC008404 Anopheles darlingi ADAC008404 I 0.673
AGAP013226 Anopheles gambiae AGAP013226 I 0.673
CG9727 Drosophila melanogaster FBgn0037445 I 0.673
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.673
GF16654 Drosophila ananassae FBgn0093675 I 0.673
GG10435 Drosophila erecta FBgn0102744 I 0.673
GI24583 Drosophila mojavensis FBgn0147305 I 0.673
GL22063 Drosophila persimilis FBgn0159655 I 0.673
GM10553 Drosophila sechellia FBgn0165499 I 0.673
GD19544 Drosophila simulans FBgn0191039 I 0.673
GJ22650 Drosophila virilis FBgn0209754 I 0.673
GK13786 Drosophila willistoni FBgn0215794 I 0.673
GE24099 Drosophila yakuba FBgn0241238 I 0.673
AALB008384 Anopheles albimanus AALB008384 I 0.673
AARA004226 Anopheles arabiensis AARA004226 I 0.673
AATE016751 Anopheles atroparvus AATE016751 I 0.673
ACHR008891 Anopheles christyi ACHR008891 I 0.673
ACOM036649 Anopheles coluzzii ACOM036649 I 0.673
ACUA017169 Anopheles culicifacies ACUA017169 I 0.673
ADIR010232 Anopheles dirus ADIR010232 I 0.673
AEPI006624 Anopheles epiroticus AEPI006624 I 0.673
AFUN011072 Anopheles funestus AFUN011072 I 0.673
AMEC002251 Anopheles melas AMEC002251 I 0.673
AMEM009524 Anopheles merus AMEM009524 I 0.673
AMIN003942 Anopheles minimus AMIN003942 I 0.673
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.673
ASIS020285 Anopheles sinensis ASIS020285 I 0.673
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.673
GH18082 Drosophila grimshawi FBgn0125550 I 0.672
CLEC011984 Cimex lectularius CLEC011984 I 0.672
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.671
AAEL013752 Aedes aegypti AAEL013752 I 0.671
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.671
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.670
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.669
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.664
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.662
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.661
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.661
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.660
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.658
ISCW001129 Ixodes scapularis ISCW001129 I 0.657
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.655
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.654
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.654
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.653
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.651
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.651
D915_00887 Fasciola hepatica D915_00887 I 0.650