ENSPSIG00000018073 (Pelodiscus sinensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSPSIG00000018073 T318471_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.744 0.763
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.744 0.763
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.744 0.763
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.744 0.763
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.744 0.763
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.744 0.763
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.744 0.763
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.744 0.763
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.744 0.763
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.744 0.763
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.744 0.763
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.744 0.763
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.744 0.763
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.744 0.763
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.744 0.763
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.699 0.632
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.699 0.632
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.699 0.632
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.699 0.632
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000020414 RFX 91 166

Links

Other RFX family TFs
Other Pelodiscus sinensis TFs

237 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.779
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.772
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.772
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.772
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.772
RFX5 Gallus gallus ENSGALG00000000836 I 0.771
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.769
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.769
Aan_R010941 Calypte anna Aan_R010941 I 0.768
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.767
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.767
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.762
RFX5 Procavia capensis ENSPCAG00000011056 I 0.760
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.755
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.755
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.755
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.752
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.752
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.752
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.751
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.751
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.748
rfx5 Danio rerio ENSDARG00000063258 I 0.748
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.748
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.746
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.745
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.745
RFX5 Bos taurus ENSBTAG00000017580 I 0.744
RFX5 Canis familiaris ENSCAFG00000012661 I 0.744
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.744
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.744
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.744
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.744
RFX5 Equus caballus ENSECAG00000024774 I 0.744
RFX5 Echinops telfairi ENSETEG00000013503 I 0.744
RFX5 Felis catus ENSFCAG00000005568 I 0.744
RFX5 Homo sapiens ENSG00000143390 D 0.744
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.744
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.744
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.744
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.744
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.744
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.744
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.744
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.744
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.744
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.744
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.744
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.744
RFX5 Sorex araneus ENSSARG00000000750 I 0.744
RFX5 Sus scrofa ENSSSCG00000006625 I 0.744
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.744
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.744
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.744
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.744
Rfx5 Mus musculus ENSMUSG00000005774 I 0.742
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.742
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.742
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.740
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.732
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.705
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.704
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.704
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.703
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.703
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.702
RFX7 Danio rerio ENSDARG00000103691 I 0.702
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.702
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.702
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.702
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.702
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.702
RFX7 Oryzias latipes ENSORLG00000005342 I 0.702
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.702
RFX7 Sorex araneus ENSSARG00000010801 I 0.702
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.702
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.702
Aan_R011989 Calypte anna Aan_R011989 I 0.702
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.702
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.702
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.702
RFX7 Equus caballus ENSECAG00000002379 I 0.701
RFX7 Homo sapiens ENSG00000181827 D 0.701
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.701
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.700
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.700
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.700
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.700
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.699
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.699
RFX7 Bos taurus ENSBTAG00000000565 I 0.699
RFX7 Canis familiaris ENSCAFG00000016029 I 0.699
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.699
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.699
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.699
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.699
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.699
RFX7 Felis catus ENSFCAG00000029408 I 0.699
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.699
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.699
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.699
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.699
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.699
Rfx7 Mus musculus ENSMUSG00000037674 D 0.699
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.699
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.699
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.699
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.699
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.699
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.699
RFX7 Procavia capensis ENSPCAG00000004974 I 0.699
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.699
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.699
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.699
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.699
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.699
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.699
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.699
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.699
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.698
rfx7 Danio rerio ENSDARG00000077237 I 0.698
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.697
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.697
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.697
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.697
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.696
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.695
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.695
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.694
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.693
csin102559 Clonorchis sinensis csin102559 I 0.693
T265_11740 Opisthorchis viverrini T265_11740 I 0.693
rfx7 Oryzias latipes ENSORLG00000008583 I 0.692
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.691
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.690
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.689
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.688
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.687
RFX7 Echinops telfairi ENSETEG00000015037 I 0.686
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.685
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.685
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.683
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.683
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.683
Smp_040350 Schistosoma mansoni Smp_040350 I 0.682
A_01977 Schistosoma haematobium A_01977 I 0.682
CapteG131555 Capitella teleta CapteG131555 I 0.681
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.681
TsM_000553100 Taenia solium TsM_000553100 I 0.681
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.681
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.680
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.680
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.680
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.680
PHUM035280 Pediculus humanus PHUM035280 I 0.677
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.675
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.674
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.674
ACEP24602 Atta cephalotes ACEP24602 I 0.672
GB49419 Apis mellifera GB49419 I 0.672
SINV24627 Solenopsis invicta SINV24627 I 0.672
TC008959 Tribolium castaneum TC008959 I 0.672
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.672
LotgiG138119 Lottia gigantea LotgiG138119 I 0.671
L798_03377 Zootermopsis nevadensis L798_03377 I 0.670
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.669
NV23037 Nasonia vitripennis NV23037 I 0.669
LCUP014592 Lucilia cuprina LCUP014592 I 0.668
MDOA009335 Musca domestica MDOA009335 I 0.668
CG9727 Drosophila melanogaster FBgn0037445 I 0.667
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.667
GG10435 Drosophila erecta FBgn0102744 I 0.667
GI24583 Drosophila mojavensis FBgn0147305 I 0.667
GL22063 Drosophila persimilis FBgn0159655 I 0.667
GM10553 Drosophila sechellia FBgn0165499 I 0.667
GD19544 Drosophila simulans FBgn0191039 I 0.667
GJ22650 Drosophila virilis FBgn0209754 I 0.667
GK13786 Drosophila willistoni FBgn0215794 I 0.667
GE24099 Drosophila yakuba FBgn0241238 I 0.667
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.667
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.666
GF16654 Drosophila ananassae FBgn0093675 I 0.666
AFAF011654 Anopheles farauti AFAF011654 I 0.666
ADAC008404 Anopheles darlingi ADAC008404 I 0.665
AGAP013226 Anopheles gambiae AGAP013226 I 0.665
GH18082 Drosophila grimshawi FBgn0125550 I 0.665
HMEL011744 Heliconius melpomene HMEL011744 I 0.665
CLEC011984 Cimex lectularius CLEC011984 I 0.665
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.665
AALB008384 Anopheles albimanus AALB008384 I 0.665
AARA004226 Anopheles arabiensis AARA004226 I 0.665
AATE016751 Anopheles atroparvus AATE016751 I 0.665
ACHR008891 Anopheles christyi ACHR008891 I 0.665
ACOM036649 Anopheles coluzzii ACOM036649 I 0.665
ACUA017169 Anopheles culicifacies ACUA017169 I 0.665
ADIR010232 Anopheles dirus ADIR010232 I 0.665
AEPI006624 Anopheles epiroticus AEPI006624 I 0.665
AFUN011072 Anopheles funestus AFUN011072 I 0.665
AMEC002251 Anopheles melas AMEC002251 I 0.665
AMEM009524 Anopheles merus AMEM009524 I 0.665
AMIN003942 Anopheles minimus AMIN003942 I 0.665
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.665
ASIS020285 Anopheles sinensis ASIS020285 I 0.665
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.665
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.664
KGM_16732 Danaus plexippus KGM_16732 I 0.664
MCINX003210 Melitaea cinxia MCINX003210 I 0.664
AAEL013752 Aedes aegypti AAEL013752 I 0.663
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.663
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.662
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.662
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.662
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.662
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.660
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.656
ISCW001129 Ixodes scapularis ISCW001129 I 0.655
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.655
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.654
D915_00887 Fasciola hepatica D915_00887 I 0.653
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.653
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.652
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.652
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.652
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.651
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.651
MCYG_06867 Microsporum canis MCYG_06867 I 0.651
A1O9_03272 Exophiala aquamarina A1O9_03272 I 0.651
ARB_07111 Arthroderma benhamiae ARB_07111 I 0.651
H101_06747 Trichophyton interdigitale H101_06747 I 0.651
H102_04304 Trichophyton rubrum H102_04304 I 0.651
H105_04329 Trichophyton soudanense H105_04329 I 0.651
MCYG_06867 Arthroderma otae MCYG_06867 I 0.651
MGYG_03742 Microsporum gypseum MGYG_03742 I 0.651
PABG_06744 Paracoccidioides brasiliensis PABG_06744 I 0.651
TEQG_02965 Trichophyton equinum TEQG_02965 I 0.651
TESG_00180 Trichophyton tonsurans TESG_00180 I 0.651
TRV_04907 Trichophyton verrucosum TRV_04907 I 0.651