Rfx5 (Rattus norvegicus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSRNOG00000021012 T318489_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.790 0.987
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.790 0.987
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.790 0.987
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.790 0.987
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.790 0.987
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.790 0.987
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.790 0.987
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.790 0.987
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.790 0.987
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.790 0.987
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.790 0.987
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.790 0.987
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.790 0.987
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.790 0.987
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.790 0.987
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.620
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.620
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.620
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.620
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000060480 RFX 88 167

Links

Other RFX family TFs
Other Rattus norvegicus TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Rfx5 Mus musculus ENSMUSG00000005774 I 0.792
RFX5 Bos taurus ENSBTAG00000017580 I 0.790
RFX5 Canis familiaris ENSCAFG00000012661 I 0.790
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.790
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.790
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.790
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.790
RFX5 Equus caballus ENSECAG00000024774 I 0.790
RFX5 Felis catus ENSFCAG00000005568 I 0.790
RFX5 Homo sapiens ENSG00000143390 D 0.790
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.790
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.790
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.790
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.790
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.790
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.790
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.790
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.790
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.790
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.790
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.790
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.790
RFX5 Sus scrofa ENSSSCG00000006625 I 0.790
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.790
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.790
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.790
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.790
RFX5 Echinops telfairi ENSETEG00000013503 I 0.789
RFX5 Sorex araneus ENSSARG00000000750 I 0.789
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.788
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.786
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.786
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.786
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.781
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.780
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.780
RFX5 Procavia capensis ENSPCAG00000011056 I 0.778
RFX5 Gallus gallus ENSGALG00000000836 I 0.769
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.764
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.762
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.760
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.760
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.759
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.756
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.756
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.749
Aan_R010941 Calypte anna Aan_R010941 I 0.745
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.745
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.742
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.742
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.742
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.742
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.742
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.742
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.741
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.739
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.739
rfx5 Danio rerio ENSDARG00000063258 I 0.738
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.737
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.736
rfx7 Danio rerio ENSDARG00000077237 I 0.718
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.716
RFX7 Danio rerio ENSDARG00000103691 I 0.716
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.716
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.716
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.716
RFX7 Oryzias latipes ENSORLG00000005342 I 0.716
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.716
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.715
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.714
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.712
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.712
RFX7 Felis catus ENSFCAG00000029408 I 0.711
csin102559 Clonorchis sinensis csin102559 I 0.711
T265_11740 Opisthorchis viverrini T265_11740 I 0.711
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.710
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.710
RFX7 Bos taurus ENSBTAG00000000565 I 0.710
RFX7 Canis familiaris ENSCAFG00000016029 I 0.710
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.710
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.710
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.710
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.710
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.710
RFX7 Homo sapiens ENSG00000181827 D 0.710
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.710
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.710
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.710
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.710
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.710
Rfx7 Mus musculus ENSMUSG00000037674 D 0.710
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.710
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.710
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.710
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.710
RFX7 Procavia capensis ENSPCAG00000004974 I 0.710
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.710
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.710
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.710
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.710
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.710
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.710
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.710
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.710
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.710
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.710
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.709
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.709
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.708
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.706
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.706
RFX7 Equus caballus ENSECAG00000002379 I 0.705
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.705
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.705
Aan_R011989 Calypte anna Aan_R011989 I 0.705
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.705
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.705
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.705
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.704
RFX7 Sorex araneus ENSSARG00000010801 I 0.704
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.704
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.702
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.702
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.701
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.701
Smp_040350 Schistosoma mansoni Smp_040350 I 0.700
A_01977 Schistosoma haematobium A_01977 I 0.700
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.698
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.698
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.698
TsM_000553100 Taenia solium TsM_000553100 I 0.698
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.698
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.697
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.697
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.697
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.697
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.696
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.696
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.696
rfx7 Oryzias latipes ENSORLG00000008583 I 0.695
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.694
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.694
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.693
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.693
RFX7 Echinops telfairi ENSETEG00000015037 I 0.690
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.690
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.690
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.690
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.690
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.690
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.689
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.689
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.688
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.688
CapteG131555 Capitella teleta CapteG131555 I 0.687
RFX5 Dasypus novemcinctus ENSDNOG00000035113 I 0.687
L798_03377 Zootermopsis nevadensis L798_03377 I 0.687
LotgiG138119 Lottia gigantea LotgiG138119 I 0.686
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.684
ACEP24602 Atta cephalotes ACEP24602 I 0.683
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.683
GB49419 Apis mellifera GB49419 I 0.683
SINV24627 Solenopsis invicta SINV24627 I 0.683
TC008959 Tribolium castaneum TC008959 I 0.683
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.683
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.682
NV23037 Nasonia vitripennis NV23037 I 0.681
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.681
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.680
HMEL011744 Heliconius melpomene HMEL011744 I 0.679
PHUM035280 Pediculus humanus PHUM035280 I 0.679
MCINX003210 Melitaea cinxia MCINX003210 I 0.678
KGM_16732 Danaus plexippus KGM_16732 I 0.675
CLEC011984 Cimex lectularius CLEC011984 I 0.675
AFAF011654 Anopheles farauti AFAF011654 I 0.674
LCUP014592 Lucilia cuprina LCUP014592 I 0.673
MDOA009335 Musca domestica MDOA009335 I 0.673
ADAC008404 Anopheles darlingi ADAC008404 I 0.672
AGAP013226 Anopheles gambiae AGAP013226 I 0.672
CG9727 Drosophila melanogaster FBgn0037445 I 0.672
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.672
GF16654 Drosophila ananassae FBgn0093675 I 0.672
GG10435 Drosophila erecta FBgn0102744 I 0.672
GI24583 Drosophila mojavensis FBgn0147305 I 0.672
GL22063 Drosophila persimilis FBgn0159655 I 0.672
GM10553 Drosophila sechellia FBgn0165499 I 0.672
GD19544 Drosophila simulans FBgn0191039 I 0.672
GJ22650 Drosophila virilis FBgn0209754 I 0.672
GK13786 Drosophila willistoni FBgn0215794 I 0.672
GE24099 Drosophila yakuba FBgn0241238 I 0.672
AALB008384 Anopheles albimanus AALB008384 I 0.672
AARA004226 Anopheles arabiensis AARA004226 I 0.672
AATE016751 Anopheles atroparvus AATE016751 I 0.672
ACHR008891 Anopheles christyi ACHR008891 I 0.672
ACOM036649 Anopheles coluzzii ACOM036649 I 0.672
ACUA017169 Anopheles culicifacies ACUA017169 I 0.672
ADIR010232 Anopheles dirus ADIR010232 I 0.672
AEPI006624 Anopheles epiroticus AEPI006624 I 0.672
AFUN011072 Anopheles funestus AFUN011072 I 0.672
AMEC002251 Anopheles melas AMEC002251 I 0.672
AMEM009524 Anopheles merus AMEM009524 I 0.672
AMIN003942 Anopheles minimus AMIN003942 I 0.672
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.672
ASIS020285 Anopheles sinensis ASIS020285 I 0.672
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.672
AAEL013752 Aedes aegypti AAEL013752 I 0.670
GH18082 Drosophila grimshawi FBgn0125550 I 0.670
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.669
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.669
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.669
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.667
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.667
ISCW001129 Ixodes scapularis ISCW001129 I 0.666
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.665
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.665
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.661
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.661
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.660
fgenesh2_pg.scaffold_3000303 Monosiga brevicollis fgenesh2_pg.scaffold_3000303 I 0.659
D915_00887 Fasciola hepatica D915_00887 I 0.659
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.657
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.655
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.654
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.654
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.652
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.652
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.651