GB49419 (Apis mellifera)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 GB49419 T318620_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.699 0.570
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.699 0.570
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.699 0.570
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.699 0.570
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.683 0.481
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.683 0.481
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.683 0.481
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.683 0.481
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.683 0.481
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.683 0.481
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.683 0.481
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.683 0.481
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.683 0.481
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.683 0.481
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.683 0.481
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.683 0.481
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.683 0.481
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.683 0.481
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.683 0.481
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GB49419-PA RFX 114 192

Links

Other RFX family TFs
Other Apis mellifera TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACEP24602 Atta cephalotes ACEP24602 I 0.785
SINV24627 Solenopsis invicta SINV24627 I 0.785
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.785
NV23037 Nasonia vitripennis NV23037 I 0.777
L798_03377 Zootermopsis nevadensis L798_03377 I 0.766
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.753
PHUM035280 Pediculus humanus PHUM035280 I 0.751
TC008959 Tribolium castaneum TC008959 I 0.751
HMEL011744 Heliconius melpomene HMEL011744 I 0.750
KGM_16732 Danaus plexippus KGM_16732 I 0.750
MCINX003210 Melitaea cinxia MCINX003210 I 0.750
CG9727 Drosophila melanogaster FBgn0037445 I 0.749
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.749
GF16654 Drosophila ananassae FBgn0093675 I 0.749
GG10435 Drosophila erecta FBgn0102744 I 0.749
GI24583 Drosophila mojavensis FBgn0147305 I 0.749
GL22063 Drosophila persimilis FBgn0159655 I 0.749
GM10553 Drosophila sechellia FBgn0165499 I 0.749
GD19544 Drosophila simulans FBgn0191039 I 0.749
GJ22650 Drosophila virilis FBgn0209754 I 0.749
GK13786 Drosophila willistoni FBgn0215794 I 0.749
GE24099 Drosophila yakuba FBgn0241238 I 0.749
MDOA009335 Musca domestica MDOA009335 I 0.749
LCUP014592 Lucilia cuprina LCUP014592 I 0.748
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.748
AFAF011654 Anopheles farauti AFAF011654 I 0.748
GH18082 Drosophila grimshawi FBgn0125550 I 0.747
ADAC008404 Anopheles darlingi ADAC008404 I 0.746
AGAP013226 Anopheles gambiae AGAP013226 I 0.746
CLEC011984 Cimex lectularius CLEC011984 I 0.746
AALB008384 Anopheles albimanus AALB008384 I 0.746
AARA004226 Anopheles arabiensis AARA004226 I 0.746
AATE016751 Anopheles atroparvus AATE016751 I 0.746
ACHR008891 Anopheles christyi ACHR008891 I 0.746
ACOM036649 Anopheles coluzzii ACOM036649 I 0.746
ACUA017169 Anopheles culicifacies ACUA017169 I 0.746
ADIR010232 Anopheles dirus ADIR010232 I 0.746
AEPI006624 Anopheles epiroticus AEPI006624 I 0.746
AFUN011072 Anopheles funestus AFUN011072 I 0.746
AMEC002251 Anopheles melas AMEC002251 I 0.746
AMEM009524 Anopheles merus AMEM009524 I 0.746
AMIN003942 Anopheles minimus AMIN003942 I 0.746
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.746
ASIS020285 Anopheles sinensis ASIS020285 I 0.746
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.746
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.745
AAEL013752 Aedes aegypti AAEL013752 I 0.744
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.743
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.743
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.737
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.726
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.720
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.720
Smp_040350 Schistosoma mansoni Smp_040350 I 0.718
A_01977 Schistosoma haematobium A_01977 I 0.718
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.717
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.716
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.716
TsM_000553100 Taenia solium TsM_000553100 I 0.716
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.716
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.709
csin102559 Clonorchis sinensis csin102559 I 0.709
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.709
T265_11740 Opisthorchis viverrini T265_11740 I 0.709
ISCW001129 Ixodes scapularis ISCW001129 I 0.708
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.707
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.706
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.706
RFX7 Felis catus ENSFCAG00000029408 I 0.703
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.701
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.701
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.701
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.701
RFX7 Oryzias latipes ENSORLG00000005342 I 0.701
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.701
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.700
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.700
RFX7 Danio rerio ENSDARG00000103691 I 0.700
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.700
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.700
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.700
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.700
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.699
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.699
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.699
RFX7 Bos taurus ENSBTAG00000000565 I 0.699
RFX7 Canis familiaris ENSCAFG00000016029 I 0.699
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.699
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.699
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.699
rfx7 Danio rerio ENSDARG00000077237 I 0.699
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.699
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.699
RFX7 Homo sapiens ENSG00000181827 D 0.699
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.699
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.699
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.699
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.699
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.699
Rfx7 Mus musculus ENSMUSG00000037674 D 0.699
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.699
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.699
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.699
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.699
RFX7 Procavia capensis ENSPCAG00000004974 I 0.699
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.699
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.699
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.699
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.699
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.699
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.699
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.699
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.699
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.699
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.697
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.697
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.696
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.696
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.696
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.696
CapteG131555 Capitella teleta CapteG131555 I 0.695
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.695
RFX7 Sorex araneus ENSSARG00000010801 I 0.695
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.695
Aan_R011989 Calypte anna Aan_R011989 I 0.695
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.695
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.695
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.695
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.695
RFX7 Equus caballus ENSECAG00000002379 I 0.694
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.694
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.694
LotgiG138119 Lottia gigantea LotgiG138119 I 0.694
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.693
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.692
rfx7 Oryzias latipes ENSORLG00000008583 I 0.692
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.691
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.691
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.690
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.690
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.689
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.689
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.688
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.688
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.687
RFX7 Echinops telfairi ENSETEG00000015037 I 0.686
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.686
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.686
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.686
rfx5 Danio rerio ENSDARG00000063258 I 0.685
RFX5 Gallus gallus ENSGALG00000000836 I 0.685
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.685
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.685
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.685
RFX5 Procavia capensis ENSPCAG00000011056 I 0.684
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.684
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.684
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.683
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.683
RFX5 Bos taurus ENSBTAG00000017580 I 0.683
RFX5 Canis familiaris ENSCAFG00000012661 I 0.683
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.683
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.683
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.683
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.683
RFX5 Equus caballus ENSECAG00000024774 I 0.683
RFX5 Echinops telfairi ENSETEG00000013503 I 0.683
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.683
RFX5 Felis catus ENSFCAG00000005568 I 0.683
RFX5 Homo sapiens ENSG00000143390 D 0.683
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.683
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.683
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.683
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.683
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.683
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.683
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.683
Rfx5 Mus musculus ENSMUSG00000005774 I 0.683
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.683
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.683
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.683
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.683
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.683
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.683
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.683
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.683
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.683
RFX5 Sorex araneus ENSSARG00000000750 I 0.683
RFX5 Sus scrofa ENSSSCG00000006625 I 0.683
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.683
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.683
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.683
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.683
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.683
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.683
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.683
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.682
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.682
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.682
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.681
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.680
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.680
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.679
Aan_R010941 Calypte anna Aan_R010941 I 0.677
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.675
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.673
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.672
MESCA006788 Megaselia scalaris MESCA006788 N 0.670
AQUA006869 Anopheles quadriannulatus AQUA006869 N 0.669
LLOJ009233 Lutzomyia longipalpis LLOJ009233 N 0.669
MESCA005939 Megaselia scalaris MESCA005939 N 0.668
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.661
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.659
CGI_10016120 Crassostrea gigas CGI_10016120 I 0.658
SPU_002235 Strongylocentrotus purpuratus SPU_002235 I 0.657
D915_00887 Fasciola hepatica D915_00887 I 0.655
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.655
MhA1_Contig1476.frz3.gene5 Meloidogyne hapla MhA1_Contig1476.frz3.gene5 I 0.654
Aqu1.223491 Amphimedon queenslandica Aqu1.223491 I 0.653
SPU_008404 Strongylocentrotus purpuratus SPU_008404 I 0.653
HelroG82191 Helobdella robusta HelroG82191 I 0.652
SMU15015144 Schmidtea mediterranea SMU15015144 I 0.652
BGIBMGA012712 Bombyx mori BGIBMGA012712 I 0.651
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.651
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.651
ECPE_0001391801 Echinostoma caproni ECPE_0001391801 N 0.651
CAOG_00356 Capsaspora owczarzaki CAOG_00356 I 0.650
maker-nMf.1.1.scaf03280-augustus-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf03280-augustus-gene-0.7 I 0.650