NEMVEDRAFT_v1g25228 (Nematostella vectensis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 NEMVEDRAFT_v1g25228 T318715_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.710 0.633
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.710 0.633
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.710 0.633
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.710 0.633
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.698 0.595
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.698 0.595
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.698 0.595
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.698 0.595
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.698 0.595
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.698 0.595
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.698 0.595
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.698 0.595
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.698 0.595
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.698 0.595
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.698 0.595
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.698 0.595
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.698 0.595
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.698 0.595
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.698 0.595
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO41435 RFX 45 125

Links

Other RFX family TFs
Other Nematostella vectensis TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.733
Ocbimv22017482m.g Octopus bimaculoides Ocbimv22017482m.g I 0.730
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.721
LotgiG138119 Lottia gigantea LotgiG138119 I 0.717
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.717
rfx7 Danio rerio ENSDARG00000077237 I 0.714
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.711
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.711
RFX7 Danio rerio ENSDARG00000103691 I 0.711
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.711
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.711
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.711
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.711
RFX7 Oryzias latipes ENSORLG00000005342 I 0.711
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.711
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.711
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.710
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.710
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.710
RFX7 Bos taurus ENSBTAG00000000565 I 0.710
RFX7 Canis familiaris ENSCAFG00000016029 I 0.710
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.710
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.710
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.710
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.710
RFX7 Homo sapiens ENSG00000181827 D 0.710
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.710
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.710
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.710
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.710
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.710
Rfx7 Mus musculus ENSMUSG00000037674 D 0.710
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.710
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.710
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.710
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.710
RFX7 Procavia capensis ENSPCAG00000004974 I 0.710
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.710
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.710
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.710
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.710
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.710
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.710
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.710
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.710
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.710
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.709
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.708
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.707
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.707
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.706
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.706
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.706
rfx7 Oryzias latipes ENSORLG00000008583 I 0.705
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.705
RFX7 Equus caballus ENSECAG00000002379 I 0.704
RFX7 Felis catus ENSFCAG00000029408 I 0.704
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.704
RFX7 Sorex araneus ENSSARG00000010801 I 0.704
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.704
Aan_R011989 Calypte anna Aan_R011989 I 0.704
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.704
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.704
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.704
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.704
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.704
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.702
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.702
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.702
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.700
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.700
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.700
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.700
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.700
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.700
ACEP24602 Atta cephalotes ACEP24602 I 0.699
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.699
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.699
GB49419 Apis mellifera GB49419 I 0.699
SINV24627 Solenopsis invicta SINV24627 I 0.699
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.699
TsM_000553100 Taenia solium TsM_000553100 I 0.699
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.699
RFX5 Bos taurus ENSBTAG00000017580 I 0.698
RFX5 Canis familiaris ENSCAFG00000012661 I 0.698
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.698
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.698
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.698
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.698
RFX5 Equus caballus ENSECAG00000024774 I 0.698
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.698
RFX5 Echinops telfairi ENSETEG00000013503 I 0.698
RFX5 Felis catus ENSFCAG00000005568 I 0.698
RFX5 Homo sapiens ENSG00000143390 D 0.698
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.698
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.698
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.698
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.698
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.698
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.698
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.698
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.698
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.698
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.698
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.698
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.698
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.698
RFX5 Sorex araneus ENSSARG00000000750 I 0.698
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.698
RFX5 Sus scrofa ENSSSCG00000006625 I 0.698
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.698
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.698
Smp_040350 Schistosoma mansoni Smp_040350 I 0.698
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.698
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.698
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.698
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.698
A_01977 Schistosoma haematobium A_01977 I 0.698
csin102559 Clonorchis sinensis csin102559 I 0.698
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.698
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.698
T265_11740 Opisthorchis viverrini T265_11740 I 0.698
Rfx5 Mus musculus ENSMUSG00000005774 I 0.697
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.697
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.697
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.697
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.697
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.697
NV23037 Nasonia vitripennis NV23037 I 0.697
TC008959 Tribolium castaneum TC008959 I 0.697
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.696
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.696
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.695
L798_03377 Zootermopsis nevadensis L798_03377 I 0.695
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.694
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.694
rfx5 Danio rerio ENSDARG00000063258 I 0.694
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.694
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.694
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.693
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.693
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.693
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.693
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.693
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.692
CapteG131555 Capitella teleta CapteG131555 I 0.691
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.691
RFX7 Echinops telfairi ENSETEG00000015037 I 0.691
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.691
RFX5 Gallus gallus ENSGALG00000000836 I 0.691
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.691
RFX5 Procavia capensis ENSPCAG00000011056 I 0.690
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.690
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.690
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.689
HMEL011744 Heliconius melpomene HMEL011744 I 0.689
MCINX003210 Melitaea cinxia MCINX003210 I 0.689
PHUM035280 Pediculus humanus PHUM035280 I 0.688
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.688
CLEC011984 Cimex lectularius CLEC011984 I 0.688
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.687
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.686
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.686
KGM_16732 Danaus plexippus KGM_16732 I 0.686
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.686
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.682
CG9727 Drosophila melanogaster FBgn0037445 I 0.681
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.681
GF16654 Drosophila ananassae FBgn0093675 I 0.681
GG10435 Drosophila erecta FBgn0102744 I 0.681
GI24583 Drosophila mojavensis FBgn0147305 I 0.681
GL22063 Drosophila persimilis FBgn0159655 I 0.681
GM10553 Drosophila sechellia FBgn0165499 I 0.681
GD19544 Drosophila simulans FBgn0191039 I 0.681
GJ22650 Drosophila virilis FBgn0209754 I 0.681
GK13786 Drosophila willistoni FBgn0215794 I 0.681
GE24099 Drosophila yakuba FBgn0241238 I 0.681
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.680
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.680
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.680
GH18082 Drosophila grimshawi FBgn0125550 I 0.679
AFAF011654 Anopheles farauti AFAF011654 I 0.679
ADAC008404 Anopheles darlingi ADAC008404 I 0.677
AGAP013226 Anopheles gambiae AGAP013226 I 0.677
AALB008384 Anopheles albimanus AALB008384 I 0.677
AARA004226 Anopheles arabiensis AARA004226 I 0.677
AATE016751 Anopheles atroparvus AATE016751 I 0.677
ACHR008891 Anopheles christyi ACHR008891 I 0.677
ACOM036649 Anopheles coluzzii ACOM036649 I 0.677
ACUA017169 Anopheles culicifacies ACUA017169 I 0.677
ADIR010232 Anopheles dirus ADIR010232 I 0.677
AEPI006624 Anopheles epiroticus AEPI006624 I 0.677
AFUN011072 Anopheles funestus AFUN011072 I 0.677
AMEC002251 Anopheles melas AMEC002251 I 0.677
AMEM009524 Anopheles merus AMEM009524 I 0.677
AMIN003942 Anopheles minimus AMIN003942 I 0.677
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.677
ASIS020285 Anopheles sinensis ASIS020285 I 0.677
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.677
MDOA009335 Musca domestica MDOA009335 I 0.676
AAEL013752 Aedes aegypti AAEL013752 I 0.675
LCUP014592 Lucilia cuprina LCUP014592 I 0.675
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.674
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.674
Aan_R010941 Calypte anna Aan_R010941 I 0.673
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.672
ISCW001129 Ixodes scapularis ISCW001129 I 0.667
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.665
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.660
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.660
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.659
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.658
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.658
D915_00887 Fasciola hepatica D915_00887 I 0.657
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.656
estExt_fgenesh2_pg.C_390014 Monosiga brevicollis estExt_fgenesh2_pg.C_390014 I 0.656
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.656
tetur35g00700 Tetranychus urticae tetur35g00700 I 0.655
PTSG_10225 Salpingoeca rosetta PTSG_10225 I 0.653
J056_003501 Wallemia ichthyophaga J056_003501 N 0.653
SJAG_04839 Schizosaccharomyces japonicus SJAG_04839 I 0.653
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.652
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.652
SPPG_01648 Spizellomyces punctatus SPPG_01648 I 0.651
scaffold324-EXSNAP2012.23 Pristionchus exspectatus scaffold324-EXSNAP2012.23 I 0.651
SOCG_01623 Schizosaccharomyces octosporus SOCG_01623 I 0.650
SPOG_03909 Schizosaccharomyces cryophilus SPOG_03909 I 0.650