CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PAXRUDRAFT_31952
(
Paxillus rubicundulus
)
RFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02257 (RFX_DNA_binding)
IPR003150
PAXRUDRAFT_31952
T318732_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN
NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.651
0.430
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.651
0.430
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM
KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.651
0.430
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA
TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.651
0.430
RFX1
M11251_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.651
0.430
For this family, TFs with SR scores >
0.650
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
KIK97144
RFX
203
281
QIFVQAWLTANYAPYPDGNVPRQGLYFSYRRVCDQYQIPHINTATLGKAIRLCFPTIKTRRLGVRGNSKYHYCGIRPAT
Links
Other
RFX
family TFs
Other
Paxillus rubicundulus
TFs
141 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PLEOSDRAFT_1038101
Pleurotus ostreatus
PLEOSDRAFT_1038101
I
0.784
AGABI2DRAFT_184602
Agaricus bisporus
AGABI2DRAFT_184602
I
0.783
CY34DRAFT_103779
Suillus luteus
CY34DRAFT_103779
I
0.783
FOMPIDRAFT_1038544
Fomitopsis pinicola
FOMPIDRAFT_1038544
I
0.783
GALMADRAFT_236082
Galerina marginata
GALMADRAFT_236082
I
0.783
HETIRDRAFT_170415
Heterobasidion irregulare
HETIRDRAFT_170415
I
0.783
K443DRAFT_673983
Laccaria amethystina
K443DRAFT_673983
I
0.783
LACBIDRAFT_311799
Laccaria bicolor
LACBIDRAFT_311799
I
0.783
M378DRAFT_67300
Amanita muscaria
M378DRAFT_67300
I
0.783
M413DRAFT_306124
Hebeloma cylindrosporum
M413DRAFT_306124
I
0.783
PHACADRAFT_25186
Phanerochaete carnosa
PHACADRAFT_25186
I
0.783
PHLGIDRAFT_115381
Phlebiopsis gigantea
PHLGIDRAFT_115381
I
0.783
PILCRDRAFT_94503
Piloderma croceum
PILCRDRAFT_94503
I
0.783
SCHCODRAFT_71685
Schizophyllum commune
SCHCODRAFT_71685
I
0.783
SERLA73DRAFT_85891
Serpula lacrymans
SERLA73DRAFT_85891
I
0.783
fgenesh1_pg.C_scaffold_2000774
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_2000774
I
0.783
EuGene4000430
Heterobasidion annosum
EuGene4000430
I
0.783
GLOTRDRAFT_32962
Gloeophyllum trabeum
GLOTRDRAFT_32962
I
0.782
JAAARDRAFT_166855
Jaapia argillacea
JAAARDRAFT_166855
I
0.782
FIBRA_04592
Fibroporia radiculosa
FIBRA_04592
I
0.781
M404DRAFT_124798
Pisolithus tinctorius
M404DRAFT_124798
I
0.781
PISMIDRAFT_670796
Pisolithus microcarpus
PISMIDRAFT_670796
I
0.781
SCLCIDRAFT_138144
Scleroderma citrinum
SCLCIDRAFT_138144
I
0.781
BN946_scf184858.g55
Trametes cinnabarina
BN946_scf184858.g55
I
0.780
DICSQDRAFT_106385
Dichomitus squalens
DICSQDRAFT_106385
I
0.780
M407DRAFT_70388
Tulasnella calospora
M407DRAFT_70388
I
0.780
CERSUDRAFT_149026
Ceriporiopsis subvermispora
CERSUDRAFT_149026
I
0.778
Moror_7356
Moniliophthora roreri
Moror_7356
N
0.778
BOTBODRAFT_100719
Botryobasidium botryosum
BOTBODRAFT_100719
N
0.775
CC1G_00311
Coprinopsis cinerea
CC1G_00311
I
0.775
V565_046180
Rhizoctonia solani
V565_046180
N
0.768
PIIN_08876
Piriformospora indica
PIIN_08876
N
0.763
DACRYDRAFT_45233
Dacryopinax sp
DACRYDRAFT_45233
I
0.761
M408DRAFT_113587
Serendipita vermifera
M408DRAFT_113587
N
0.757
PGTG_11391
Puccinia graminis
PGTG_11391
I
0.729
PTTG_01668
Puccinia triticina
PTTG_01668
I
0.710
E5Q_03025
Mixia osmundae
E5Q_03025
I
0.690
E5Q_03026
Mixia osmundae
E5Q_03026
I
0.690
fgeneshTM_pg.2_#_559
Tremella mesenterica
fgeneshTM_pg.2_#_559
I
0.689
MVLG_04348
Microbotryum violaceum
MVLG_04348
I
0.677
SPPG_01648
Spizellomyces punctatus
SPPG_01648
I
0.676
A1Q1_00828
Trichosporon asahii
A1Q1_00828
I
0.666
PNEG_02893
Pneumocystis murina
PNEG_02893
I
0.664
PredSwiss_ASS2010_3110.1
Pneumocystis carinii
PredSwiss_ASS2010_3110.1
I
0.664
PredSwiss_CON653.4
Pneumocystis carinii
PredSwiss_CON653.4
I
0.664
GSTUM_00005211001
Tuber melanosporum
GSTUM_00005211001
I
0.663
GPLIN_000191300
Globodera pallida
GPLIN_000191300
I
0.660
Mycgr3G110369
Zymoseptoria tritici
Mycgr3G110369
I
0.659
NERG_01713
Nematocida sp
NERG_01713
I
0.659
O9G_004738
Rozella allomycis
O9G_004738
I
0.659
SJAG_04839
Schizosaccharomyces japonicus
SJAG_04839
I
0.659
sak1
Schizosaccharomyces pombe
SPAC3G9.14
I
0.659
estExt_fgenesh1_pg.C_chr_80140
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_80140
I
0.659
ACRE_029400
Acremonium chrysogenum
ACRE_029400
I
0.656
BDDG_02784
Blastomyces dermatitidis
BDDG_02784
I
0.656
DOTSEDRAFT_132769
Dothistroma septosporum
DOTSEDRAFT_132769
I
0.655
HelroG82191
Helobdella robusta
HelroG82191
I
0.655
MYCFIDRAFT_10959
Pseudocercospora fijiensis
MYCFIDRAFT_10959
I
0.655
NEPG_00460
Nematocida parisii ertm1
NEPG_00460
I
0.655
gw1.15.255.1
Mycosphaerella fijiensis
gw1.15.255.1
I
0.655
AACERI_AaceriAAL010W
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriAAL010W
I
0.654
AGOS_AAL010W
Ashbya gossypii
AGOS_AAL010W
I
0.654
BAUCODRAFT_23427
Baudoinia compniacensis
BAUCODRAFT_23427
I
0.654
HCBG_05483
Histoplasma capsulatum
HCBG_05483
I
0.654
PVAR5_6603
Byssochlamys spectabilis
PVAR5_6603
I
0.654
YALI0_E13596g
Yarrowia lipolytica
YALI0_E13596g
I
0.654
14959_Multiple
Saccharomyces mikatae
14959_Multiple
I
0.654
SAKL0D08734g
Lachancea kluyveri
SAKL0D08734g
I
0.654
ACLA_009440
Aspergillus clavatus
CADACLAG00001004
I
0.653
CADAFLAG00010851
Aspergillus flavus
CADAFLAG00010851
I
0.653
AFUA_5G06120
Aspergillus fumigatus
CADAFUAG00006202
I
0.653
CADANGAG00013568
Aspergillus niger
CADANGAG00013568
I
0.653
ANIA_02296
Aspergillus nidulans
CADANIAG00008989
I
0.653
CADAORAG00004061
Aspergillus oryzae
CADAORAG00004061
I
0.653
ATEG_09416
Aspergillus terreus
CADATEAG00008983
I
0.653
NFIA_036980
Neosartorya fischeri
CADNFIAG00003299
I
0.653
CAGL0B04895g
Candida glabrata
CAGL0B04895g
I
0.653
EURHEDRAFT_516724
Aspergillus ruber
EURHEDRAFT_516724
I
0.653
PAAG_00480
Paracoccidioides sp lutzii
PAAG_00480
I
0.653
PABG_06744
Paracoccidioides brasiliensis
PABG_06744
I
0.653
SEPMUDRAFT_46603
Sphaerulina musiva
SEPMUDRAFT_46603
I
0.653
TDEL_0B05980
Torulaspora delbrueckii
TDEL_0B05980
I
0.653
fgenesh1_pg.00162_#_176
Aspergillus carbonarius
fgenesh1_pg.00162_#_176
I
0.653
CIMG_05985
Coccidioides immitis
CIMG_05985
I
0.652
CPC735_025690
Coccidioides posadasii
CPC735_025690
I
0.652
PCH_Pc20g01690
Penicillium rubens
PCH_Pc20g01690
I
0.652
PDE_02161
Penicillium oxalicum
PDE_02161
I
0.652
PDIP_47410
Penicillium digitatum
PDIP_47410
I
0.652
PEX1_087840
Penicillium expansum
PEX1_087840
I
0.652
PITC_028740
Penicillium italicum
PITC_028740
I
0.652
PMAA_084960
Talaromyces marneffei
PMAA_084960
I
0.652
SOCG_01623
Schizosaccharomyces octosporus
SOCG_01623
I
0.652
TSTA_119980
Talaromyces stipitatus
TSTA_119980
I
0.652
U727_0043066021
Penicillium solitum
U727_0043066021
I
0.652
UREG_04378
Uncinocarpus reesii
UREG_04378
I
0.652
Pc20g01690
Penicillium chrysogenum
Pc20g01690
I
0.652
PMAA_084960
Penicillium marneffei
PMAA_084960
I
0.652
WUBG_07284
Wuchereria bancrofti
WUBG_07284
I
0.651
A1O1_08600
Capronia coronata
A1O1_08600
I
0.651
A1O5_04383
Cladophialophora psammophila
A1O5_04383
I
0.651
A1O9_03272
Exophiala aquamarina
A1O9_03272
I
0.651
ARB_07111
Arthroderma benhamiae
ARB_07111
I
0.651
Bm3804
Brugia malayi
Bm3804
I
0.651
CAGL0H03751g
Candida glabrata
CAGL0H03751g
I
0.651
DRE_06212
Drechslerella stenobrocha
DRE_06212
I
0.651
GNLVRS01_PISO0E08012g
Millerozyma farinosa
GNLVRS01_PISO0E08012g
I
0.651
GNLVRS01_PISO0F09355g
Millerozyma farinosa
GNLVRS01_PISO0F09355g
I
0.651
H101_06747
Trichophyton interdigitale
H101_06747
I
0.651
H102_04304
Trichophyton rubrum
H102_04304
I
0.651
HMPREF1120_04684
Exophiala dermatitidis
HMPREF1120_04684
I
0.651
LALA0_S03e09428g
Lachancea lanzarotensis
LALA0_S03e09428g
I
0.651
LOAG_17230
Loa loa
LOAG_17230
I
0.651
MGYG_03742
Microsporum gypseum
MGYG_03742
I
0.651
PV05_05335
Exophiala xenobiotica
PV05_05335
I
0.651
PV06_00023
Exophiala oligosperma
PV06_00023
I
0.651
PV07_06647
Cladophialophora immunda
PV07_06647
I
0.651
PV08_04071
Exophiala spinifera
PV08_04071
I
0.651
PV10_05596
Exophiala mesophila
PV10_05596
I
0.651
SPOG_03909
Schizosaccharomyces cryophilus
SPOG_03909
I
0.651
TEQG_02965
Trichophyton equinum
TEQG_02965
I
0.651
TESG_00180
Trichophyton tonsurans
TESG_00180
I
0.651
TRV_04907
Trichophyton verrucosum
TRV_04907
I
0.651
WBGene00247845
Onchocerca volvulus
WBGene00247845
I
0.651
RFX1
Saccharomyces cerevisiae
YLR176C
D
0.651
Z517_10332
Fonsecaea pedrosoi
Z517_10332
I
0.651
estExt_fgenesh2_pg.C_4710022
Branchiostoma floridae
estExt_fgenesh2_pg.C_4710022
I
0.651
16177_Multiple
Saccharomyces paradoxus
16177_Multiple
I
0.651
ALUE_0001355401
Ascaris lumbricoides
ALUE_0001355401
I
0.651
ASU_01592
Ascaris suum
ASU_01592
I
0.651
EEL_0000135001
Elaeophora elaphi
EEL_0000135001
I
0.651
nAv.1.0.1.g06901
Acanthocheilonema viteae
nAv.1.0.1.g06901
I
0.651
nDi.2.2.2.g03767
Dirofilaria immitis
nDi.2.2.2.g03767
I
0.651
nLs.2.1.2.g03959
Litomosoides sigmodontis
nLs.2.1.2.g03959
I
0.651
nOo.2.0.1.g04858
Onchocerca ochengi
nOo.2.0.1.g04858
I
0.651
OFLC_0000277501
Onchocerca flexuosa
OFLC_0000277501
I
0.651
SMUV_0001085601
Syphacia muris
SMUV_0001085601
I
0.651
TCNE_0001843801
Toxocara canis
TCNE_0001843801
I
0.651
CAOG_00356
Capsaspora owczarzaki
CAOG_00356
I
0.650
MCYG_06867
Microsporum canis
MCYG_06867
I
0.650
MCYG_06867
Arthroderma otae
MCYG_06867
I
0.650
PV11_01295
Exophiala sideris
PV11_01295
I
0.650