Ocbimv22017482m.g (Octopus bimaculoides)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 Ocbimv22017482m.g T319049_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.715 0.633
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.715 0.633
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.715 0.633
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.715 0.633
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.710 0.646
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.710 0.646
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.710 0.646
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.710 0.646
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.710 0.646
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.710 0.646
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.710 0.646
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.710 0.646
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.710 0.646
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.710 0.646
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.710 0.646
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.710 0.646
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.710 0.646
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.710 0.646
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.710 0.646
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22017482m.p RFX 44 122

Links

Other RFX family TFs
Other Octopus bimaculoides TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LotgiG138119 Lottia gigantea LotgiG138119 I 0.737
HNAJ_0001122601 Hymenolepis nana HNAJ_0001122601 I 0.735
HDID_0000095701 Hymenolepis diminuta HDID_0000095701 I 0.734
HmN_000672900 Hymenolepis microstoma HmN_000672900 I 0.734
Smp_040350 Schistosoma mansoni Smp_040350 I 0.733
A_01977 Schistosoma haematobium A_01977 I 0.733
csin102559 Clonorchis sinensis csin102559 I 0.733
ECANG7_06078 Echinococcus canadensis ECANG7_06078 I 0.733
EmuJ_001055400 Echinococcus multilocularis EmuJ_001055400 I 0.733
T265_11740 Opisthorchis viverrini T265_11740 I 0.733
TsM_000553100 Taenia solium TsM_000553100 I 0.732
TTAC_0000027401 Hydatigera taeniaeformis TTAC_0000027401 I 0.732
NEMVEDRAFT_v1g25228 Nematostella vectensis NEMVEDRAFT_v1g25228 I 0.730
rfx7 Danio rerio ENSDARG00000077237 I 0.724
Sjc_0019090 Schistosoma japonicum Sjc_0019090 I 0.724
SROB_0001335501 Schistosoma rodhaini SROB_0001335501 I 0.724
SMU15027042 Schmidtea mediterranea SMU15027042 I 0.723
ENSAMXG00000014807 Astyanax mexicanus ENSAMXG00000014807 I 0.720
ENSAMXG00000020093 Astyanax mexicanus ENSAMXG00000020093 I 0.720
RFX7 Danio rerio ENSDARG00000103691 I 0.720
RFX7 Gasterosteus aculeatus ENSGACG00000006090 I 0.720
ENSGMOG00000004164 Gadus morhua ENSGMOG00000004164 I 0.720
ENSLOCG00000013505 Lepisosteus oculatus ENSLOCG00000013505 I 0.720
ENSONIG00000008334 Oreochromis niloticus ENSONIG00000008334 I 0.720
RFX7 Oryzias latipes ENSORLG00000005342 I 0.720
ENSXMAG00000006676 Xiphophorus maculatus ENSXMAG00000006676 I 0.720
ENSPMAG00000005066 Petromyzon marinus ENSPMAG00000005066 I 0.719
ENSGMOG00000002477 Gadus morhua ENSGMOG00000002477 I 0.717
RFX7 Tetraodon nigroviridis ENSTNIG00000013706 I 0.717
RFX7 Takifugu rubripes ENSTRUG00000008008 I 0.717
rfx7 Xenopus tropicalis XB-GENE-1008447 I 0.716
CGI_10006904 Crassostrea gigas CGI_10006904 I 0.715
RFX7 Anolis carolinensis ENSACAG00000008482 I 0.715
ENSAMEG00000018368 Ailuropoda melanoleuca ENSAMEG00000018368 I 0.715
ENSAPLG00000005911 Anas platyrhynchos ENSAPLG00000005911 I 0.715
RFX7 Bos taurus ENSBTAG00000000565 I 0.715
RFX7 Canis familiaris ENSCAFG00000016029 I 0.715
RFX7 Choloepus hoffmanni ENSCHOG00000003451 I 0.715
ENSCPOG00000005366 Cavia porcellus ENSCPOG00000005366 I 0.715
ENSCSAG00000011819 Chlorocebus sabaeus ENSCSAG00000011819 I 0.715
ENSFALG00000012087 Ficedula albicollis ENSFALG00000012087 I 0.715
RFX7 Homo sapiens ENSG00000181827 D 0.715
ENSLACG00000015878 Latimeria chalumnae ENSLACG00000015878 I 0.715
RFX7 Loxodonta africana ENSLAFG00000018745 I 0.715
RFX7 Meleagris gallopavo ENSMGAG00000005745 I 0.715
RFX7 Monodelphis domestica ENSMODG00000008136 I 0.715
ENSMPUG00000002204 Mustela putorius furo ENSMPUG00000002204 I 0.715
Rfx7 Mus musculus ENSMUSG00000037674 D 0.715
ENSNLEG00000006658 Nomascus leucogenys ENSNLEG00000006658 I 0.715
RFX7 Ornithorhynchus anatinus ENSOANG00000008526 I 0.715
RFX7 Oryctolagus cuniculus ENSOCUG00000013678 I 0.715
ENSPANG00000017297 Papio anubis ENSPANG00000017297 I 0.715
RFX7 Procavia capensis ENSPCAG00000004974 I 0.715
ENSPPYG00000006502 Pongo abelii ENSPPYG00000006502 I 0.715
ENSPSIG00000014731 Pelodiscus sinensis ENSPSIG00000014731 I 0.715
RFX7 Pan troglodytes ENSPTRG00000007104 I 0.715
Rfx7 Rattus norvegicus ENSRNOG00000060367 I 0.715
ENSSHAG00000003875 Sarcophilus harrisii ENSSHAG00000003875 I 0.715
ENSTSYG00000002441 Tarsius syrichta ENSTSYG00000002441 I 0.715
RFX7 Tursiops truncatus ENSTTRG00000010051 I 0.715
RFX7 Vicugna pacos ENSVPAG00000012402 I 0.715
RFX7 Dasypus novemcinctus ENSDNOG00000044983 I 0.714
RFX7 Myotis lucifugus ENSMLUG00000028676 I 0.714
ENSOARG00000020885 Ovis aries ENSOARG00000020885 I 0.714
RFX7 Otolemur garnettii ENSOGAG00000031795 I 0.714
RFX7 Pteropus vampyrus ENSPVAG00000005381 I 0.714
XP_002167798.1 Hydra magnipapillata XP_002167798.1 I 0.714
RFX7 Equus caballus ENSECAG00000002379 I 0.712
RFX7 Macaca mulatta ENSMMUG00000017801 I 0.712
RFX7 Sorex araneus ENSSARG00000010801 I 0.712
ENSSTOG00000013246 Ictidomys tridecemlineatus ENSSTOG00000013246 I 0.712
RFX7 Taeniopygia guttata ENSTGUG00000006356 I 0.712
Aan_R011989 Calypte anna Aan_R011989 I 0.712
Afo_R011605 Aptenodytes forsteri Afo_R011605 I 0.712
ENSMMUP00000033587 Macaca fascicularis ENSMMUP00000033587 I 0.712
ENSP00000397644-D1 Bos grunniens ENSP00000397644-D1 I 0.712
Gfo_R004305 Geospiza fortis Gfo_R004305 I 0.712
rfx5 Tetraodon nigroviridis ENSTNIG00000005388 I 0.711
ENSTRUG00000000177 Takifugu rubripes ENSTRUG00000000177 I 0.711
Myotis_brandtii_RFX7_10006263 Myotis brandtii Myotis_brandtii_RFX7_10006263 I 0.711
RFX5 Bos taurus ENSBTAG00000017580 I 0.710
RFX5 Canis familiaris ENSCAFG00000012661 I 0.710
RFX5 Callithrix jacchus ENSCJAG00000007482 I 0.710
ENSCPOG00000010643 Cavia porcellus ENSCPOG00000010643 I 0.710
ENSCSAG00000001799 Chlorocebus sabaeus ENSCSAG00000001799 I 0.710
ENSDORG00000015967 Dipodomys ordii ENSDORG00000015967 I 0.710
RFX5 Equus caballus ENSECAG00000024774 I 0.710
RFX5 Echinops telfairi ENSETEG00000013503 I 0.710
RFX5 Felis catus ENSFCAG00000005568 I 0.710
RFX5 Homo sapiens ENSG00000143390 D 0.710
RFX5 Gorilla gorilla ENSGGOG00000016795 I 0.710
RFX5 Loxodonta africana ENSLAFG00000030906 I 0.710
ENSMMUG00000013172 Macaca mulatta ENSMMUG00000013172 I 0.710
ENSMPUG00000003735 Mustela putorius furo ENSMPUG00000003735 I 0.710
Rfx5 Mus musculus ENSMUSG00000005774 I 0.710
ENSNLEG00000010170 Nomascus leucogenys ENSNLEG00000010170 I 0.710
ENSOARG00000020987 Ovis aries ENSOARG00000020987 I 0.710
ENSOCUG00000011564 Oryctolagus cuniculus ENSOCUG00000011564 I 0.710
RFX5 Otolemur garnettii ENSOGAG00000008120 I 0.710
rfx7 Oryzias latipes ENSORLG00000008583 I 0.710
ENSPANG00000005712 Papio anubis ENSPANG00000005712 I 0.710
ENSPFOG00000010592 Poecilia formosa ENSPFOG00000010592 I 0.710
ENSPPYG00000000867 Pongo abelii ENSPPYG00000000867 I 0.710
RFX5 Pan troglodytes ENSPTRG00000001286 I 0.710
RFX5 Pteropus vampyrus ENSPVAG00000011680 I 0.710
Rfx5 Rattus norvegicus ENSRNOG00000021012 I 0.710
RFX5 Sorex araneus ENSSARG00000000750 I 0.710
RFX5 Sus scrofa ENSSSCG00000006625 I 0.710
RFX5 Tupaia belangeri ENSTBEG00000006419 I 0.710
RFX5 Tursiops truncatus ENSTTRG00000007023 I 0.710
ENSXMAG00000017295 Xiphophorus maculatus ENSXMAG00000017295 I 0.710
ENSP00000389130-D1 Bos grunniens ENSP00000389130-D1 I 0.710
ENSP00000389130 Macaca fascicularis ENSP00000389130 I 0.710
RFX7 Felis catus ENSFCAG00000029408 I 0.709
ENSMEUG00000011101 Macropus eugenii ENSMEUG00000011101 I 0.709
ENSONIG00000003955 Oreochromis niloticus ENSONIG00000003955 I 0.709
ENSSHAG00000014366 Sarcophilus harrisii ENSSHAG00000014366 I 0.709
ENSAMXG00000008359 Astyanax mexicanus ENSAMXG00000008359 I 0.708
ENSLOCG00000008459 Lepisosteus oculatus ENSLOCG00000008459 I 0.708
ENSONIG00000005780 Oreochromis niloticus ENSONIG00000005780 I 0.708
SPU_027998 Strongylocentrotus purpuratus SPU_027998 I 0.708
tetur02g00620 Tetranychus urticae tetur02g00620 I 0.708
ENSPFOG00000002938 Poecilia formosa ENSPFOG00000002938 I 0.707
Pvit_17399 Pogona vitticeps Pvit_17399 I 0.707
ACEP24602 Atta cephalotes ACEP24602 I 0.706
DAPPUDRAFT_64123 Daphnia pulex DAPPUDRAFT_64123 I 0.706
RFX5 Choloepus hoffmanni ENSCHOG00000012900 I 0.706
rfx5 Danio rerio ENSDARG00000063258 I 0.706
rfx7 Gasterosteus aculeatus ENSGACG00000015838 I 0.706
GB49419 Apis mellifera GB49419 I 0.706
SINV24627 Solenopsis invicta SINV24627 I 0.706
Hsal_12778--XP_001120516.1_APIME Harpegnathos saltator Hsal_12778--XP_001120516.1_APIME I 0.706
ENSAMEG00000000695 Ailuropoda melanoleuca ENSAMEG00000000695 I 0.705
RFX5 Myotis lucifugus ENSMLUG00000015218 I 0.705
ENSORLG00000001269 Oryzias latipes ENSORLG00000001269 I 0.705
L798_03377 Zootermopsis nevadensis L798_03377 I 0.705
Myotis_brandtii_RFX5_10008035 Myotis brandtii Myotis_brandtii_RFX5_10008035 I 0.705
ENSACAG00000029645 Anolis carolinensis ENSACAG00000029645 I 0.704
RFX5 Gallus gallus ENSGALG00000000836 I 0.704
rfx7 Takifugu rubripes ENSTRUG00000017897 I 0.704
ENSXMAG00000003651 Xiphophorus maculatus ENSXMAG00000003651 I 0.704
NV23037 Nasonia vitripennis NV23037 I 0.704
RFX7 Erinaceus europaeus ENSEEUG00000013718 I 0.703
ENSFALG00000010929 Ficedula albicollis ENSFALG00000010929 I 0.703
Alligator_sinensis_CCG008945.1 Alligator sinensis Alligator_sinensis_CCG008945.1 I 0.703
Brh_R008414 Buceros rhinoceros Brh_R008414 I 0.703
Gfo_R003263 Geospiza fortis Gfo_R003263 I 0.703
e_gw.237.152.1 Branchiostoma floridae e_gw.237.152.1 I 0.703
rfx5 Xenopus tropicalis XB-GENE-5942579 I 0.703
RFX5 Procavia capensis ENSPCAG00000011056 I 0.702
CapteG131555 Capitella teleta CapteG131555 I 0.701
Afo_R007667 Aptenodytes forsteri Afo_R007667 I 0.701
RFX7 Echinops telfairi ENSETEG00000015037 I 0.700
Alligator_sinensis_CCG020683.1 Alligator sinensis Alligator_sinensis_CCG020683.1 I 0.700
RFX5 Erinaceus europaeus ENSEEUG00000010785 I 0.699
ENSMGAG00000001126 Meleagris gallopavo ENSMGAG00000001126 I 0.699
rfx7 Tetraodon nigroviridis ENSTNIG00000009322 I 0.699
HMEL011744 Heliconius melpomene HMEL011744 I 0.699
MCINX003210 Melitaea cinxia MCINX003210 I 0.699
LDEC011897 Leptinotarsa decemlineata LDEC011897 I 0.698
PHUM035280 Pediculus humanus PHUM035280 I 0.697
KGM_16732 Danaus plexippus KGM_16732 I 0.696
Pvit_04986 Pogona vitticeps Pvit_04986 I 0.695
ENSPSIG00000018073 Pelodiscus sinensis ENSPSIG00000018073 I 0.694
TC008959 Tribolium castaneum TC008959 I 0.694
rfx5.S Xenopus laevis XB-GENE-6079297 I 0.694
AFAF011654 Anopheles farauti AFAF011654 I 0.693
ADAC008404 Anopheles darlingi ADAC008404 I 0.691
AGAP013226 Anopheles gambiae AGAP013226 I 0.691
CLEC011984 Cimex lectularius CLEC011984 I 0.691
AALB008384 Anopheles albimanus AALB008384 I 0.691
AARA004226 Anopheles arabiensis AARA004226 I 0.691
AATE016751 Anopheles atroparvus AATE016751 I 0.691
ACHR008891 Anopheles christyi ACHR008891 I 0.691
ACOM036649 Anopheles coluzzii ACOM036649 I 0.691
ACUA017169 Anopheles culicifacies ACUA017169 I 0.691
ADIR010232 Anopheles dirus ADIR010232 I 0.691
AEPI006624 Anopheles epiroticus AEPI006624 I 0.691
AFUN011072 Anopheles funestus AFUN011072 I 0.691
AMEC002251 Anopheles melas AMEC002251 I 0.691
AMEM009524 Anopheles merus AMEM009524 I 0.691
AMIN003942 Anopheles minimus AMIN003942 I 0.691
AQUA006870 Anopheles quadriannulatus AQUA006870 I 0.691
ASIS020285 Anopheles sinensis ASIS020285 I 0.691
ASTEI04100 Anopheles stephensi ASTEI04100 I 0.691
CG9727 Drosophila melanogaster FBgn0037445 I 0.690
GA21990 Drosophila pseudoobscura FBgn0081975 I 0.690
GF16654 Drosophila ananassae FBgn0093675 I 0.690
GG10435 Drosophila erecta FBgn0102744 I 0.690
GI24583 Drosophila mojavensis FBgn0147305 I 0.690
GL22063 Drosophila persimilis FBgn0159655 I 0.690
GM10553 Drosophila sechellia FBgn0165499 I 0.690
GD19544 Drosophila simulans FBgn0191039 I 0.690
GJ22650 Drosophila virilis FBgn0209754 I 0.690
GK13786 Drosophila willistoni FBgn0215794 I 0.690
GE24099 Drosophila yakuba FBgn0241238 I 0.690
Ogr13052 Ophisaurus gracilis Ogr13052 I 0.690
BGIBMGA007758 Bombyx mori BGIBMGA007758 I 0.689
LCUP014592 Lucilia cuprina LCUP014592 I 0.689
MDOA009335 Musca domestica MDOA009335 I 0.689
CpipJ_CPIJ006094 Culex pipiens CpipJ_CPIJ006094 I 0.688
AAEL013752 Aedes aegypti AAEL013752 I 0.688
CPIJ006094 Culex quinquefasciatus CPIJ006094 I 0.688
GH18082 Drosophila grimshawi FBgn0125550 I 0.688
ISCW001129 Ixodes scapularis ISCW001129 I 0.688
Aan_R010941 Calypte anna Aan_R010941 I 0.688
Cflo_11342--XP_001120516.1_APIME Camponotus floridanus Cflo_11342--XP_001120516.1_APIME I 0.686
D915_00887 Fasciola hepatica D915_00887 I 0.672
SCUD_0001838101 Schistosoma curassoni SCUD_0001838101 I 0.672
Ogr11408 Ophisaurus gracilis Ogr11408 I 0.670
ECPE_0001841201 Echinostoma caproni ECPE_0001841201 I 0.670
ENSMEUG00000007846 Macropus eugenii ENSMEUG00000007846 I 0.663
ENSSSCG00000024042 Sus scrofa ENSSSCG00000024042 I 0.663
ENSTSYG00000003230 Tarsius syrichta ENSTSYG00000003230 I 0.661
Cmyd_10007628 Chelonia mydas Cmyd_10007628 I 0.661
RFX5 Monodelphis domestica ENSMODG00000018866 I 0.659
Cmyd_10014217 Chelonia mydas Cmyd_10014217 I 0.659
sak1 Schizosaccharomyces pombe SPAC3G9.14 I 0.658
AMAG_10999 Allomyces macrogynus AMAG_10999 I 0.657
AMAG_11601 Allomyces macrogynus AMAG_11601 I 0.657
BDDG_02784 Blastomyces dermatitidis BDDG_02784 I 0.657
RFX7 Ochotona princeps ENSOPRG00000003155 I 0.657
KAFR_0H03130 Kazachstania africana KAFR_0H03130 I 0.657
SJAG_04839 Schizosaccharomyces japonicus SJAG_04839 I 0.656
DEHA2G10868g Debaryomyces hansenii DEHA2G10868g I 0.651
ENSAPLG00000002900 Anas platyrhynchos ENSAPLG00000002900 I 0.651
RFX7 Tupaia belangeri ENSTBEG00000014637 I 0.651
SOCG_01623 Schizosaccharomyces octosporus SOCG_01623 I 0.651
SPOG_03909 Schizosaccharomyces cryophilus SPOG_03909 I 0.651
TBLA_0C01490 Tetrapisispora blattae TBLA_0C01490 I 0.651
ECPE_0001391801 Echinostoma caproni ECPE_0001391801 N 0.651