XP_002943959 (Xenopus tropicalis)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02257 (RFX_DNA_binding) IPR003150 XP_002943959 T319091_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RFX4
M02448_2.00 		Cavia porcellus
GTHDYYNNGN
NCNNRRHDAC		 PBM
Weirauch et al.(2014)
pTH9249 		0.654 1.000
Rfx4
M00186_2.00 		Mus musculus
GTHDYYNNSN
NSNNRRHDAC		 PBM
Badis et al.(2009)
Rfx4_3761 		0.654 1.000
RFX4
M03456_2.00 		Homo sapiens
NGTWRYCATRGHWACN
NGTWDCYATGRYWACN		 SELEX
Jolma et al.(2013)
RFX4_1 		0.654 1.000
RFX4
M03457_2.00 		Homo sapiens
NGTTGCYRRGCAACS
SGTTGCYYRGCAACN		 SELEX
Jolma et al.(2013)
RFX4_2 		0.654 1.000
RFX4
M05721_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX 		0.654 1.000
RFX4
M05722_2.00 		Homo sapiens
BGTWRYCATGRYWACV
BGTWRYCATGRYWACV		 SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX 		0.654 1.000
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
XP_002943959 RFX 1 31

Links

Other RFX family TFs
Other Xenopus tropicalis TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RFX4 Anolis carolinensis ENSACAG00000015355 I 0.654
ENSAMEG00000016059 Ailuropoda melanoleuca ENSAMEG00000016059 I 0.654
ENSAMXG00000020148 Astyanax mexicanus ENSAMXG00000020148 I 0.654
ENSAPLG00000005849 Anas platyrhynchos ENSAPLG00000005849 I 0.654
RFX4 Canis familiaris ENSCAFG00000001813 I 0.654
RFX4 Cavia porcellus ENSCPOG00000001750 D 0.654
ENSCSAG00000002952 Chlorocebus sabaeus ENSCSAG00000002952 I 0.654
rfx4 Danio rerio ENSDARG00000026395 I 0.654
RFX4 Dasypus novemcinctus ENSDNOG00000000799 I 0.654
Rfx4 Dipodomys ordii ENSDORG00000003959 I 0.654
RFX4 Equus caballus ENSECAG00000005111 I 0.654
ENSFALG00000013407 Ficedula albicollis ENSFALG00000013407 I 0.654
RFX4 Felis catus ENSFCAG00000015618 I 0.654
RFX4 Homo sapiens ENSG00000111783 D 0.654
RFX4 Gallus gallus ENSGALG00000012647 I 0.654
RFX4 Gorilla gorilla ENSGGOG00000007759 I 0.654
ENSGMOG00000004267 Gadus morhua ENSGMOG00000004267 I 0.654
ENSLACG00000017280 Latimeria chalumnae ENSLACG00000017280 I 0.654
RFX4 Loxodonta africana ENSLAFG00000014122 I 0.654
ENSLOCG00000015258 Lepisosteus oculatus ENSLOCG00000015258 I 0.654
RFX4 Meleagris gallopavo ENSMGAG00000012867 I 0.654
RFX4 Myotis lucifugus ENSMLUG00000016257 I 0.654
RFX4 Macaca mulatta ENSMMUG00000022118 I 0.654
RFX4 Monodelphis domestica ENSMODG00000001661 I 0.654
ENSMPUG00000012144 Mustela putorius furo ENSMPUG00000012144 I 0.654
Rfx4 Mus musculus ENSMUSG00000020037 D 0.654
ENSNLEG00000006695 Nomascus leucogenys ENSNLEG00000006695 I 0.654
ENSOANG00000005534 Ornithorhynchus anatinus ENSOANG00000005534 I 0.654
ENSOARG00000017616 Ovis aries ENSOARG00000017616 I 0.654
RFX4 Oryctolagus cuniculus ENSOCUG00000028228 I 0.654
RFX4 Otolemur garnettii ENSOGAG00000003546 I 0.654
RFX4 Ochotona princeps ENSOPRG00000008616 I 0.654
ENSPANG00000006357 Papio anubis ENSPANG00000006357 I 0.654
ENSPPYG00000004906 Pongo abelii ENSPPYG00000004906 I 0.654
ENSPSIG00000015178 Pelodiscus sinensis ENSPSIG00000015178 I 0.654
RFX4 Pan troglodytes ENSPTRG00000005391 I 0.654
RFX4 Pteropus vampyrus ENSPVAG00000005862 I 0.654
Rfx4 Rattus norvegicus ENSRNOG00000051536 I 0.654
ENSSHAG00000013027 Sarcophilus harrisii ENSSHAG00000013027 I 0.654
ENSSSCG00000000168 Sus scrofa ENSSSCG00000000168 I 0.654
RFX4 Tupaia belangeri ENSTBEG00000014680 I 0.654
ENSTGUG00000011025 Taeniopygia guttata ENSTGUG00000011025 I 0.654
ENSTSYG00000008562 Tarsius syrichta ENSTSYG00000008562 I 0.654
RFX4 Tursiops truncatus ENSTTRG00000010688 I 0.654
Aan_R008662 Calypte anna Aan_R008662 I 0.654
Afo_R011060 Aptenodytes forsteri Afo_R011060 I 0.654
Alligator_sinensis_CCG009361.1 Alligator sinensis Alligator_sinensis_CCG009361.1 I 0.654
Brh_R002885 Buceros rhinoceros Brh_R002885 I 0.654
ENSBTAP00000000169-D1 Bos grunniens ENSBTAP00000000169-D1 I 0.654
ENSP00000350552 Macaca fascicularis ENSP00000350552 I 0.654
Gfo_R004629 Geospiza fortis Gfo_R004629 I 0.654
Myotis_brandtii_RFX4_10020417 Myotis brandtii Myotis_brandtii_RFX4_10020417 I 0.654
Pvit_09762 Pogona vitticeps Pvit_09762 I 0.654
Tal_R013010 Tyto alba Tal_R013010 I 0.654
Sakowv30039514m.g Saccoglossus kowalevskii Sakowv30039514m.g I 0.654
DAPPUDRAFT_42744 Daphnia pulex DAPPUDRAFT_42744 I 0.651
rfx4 Gasterosteus aculeatus ENSGACG00000011830 I 0.651
ENSONIG00000014750 Oreochromis niloticus ENSONIG00000014750 I 0.651
rfx4 Oryzias latipes ENSORLG00000011114 I 0.651
ENSPFOG00000016523 Poecilia formosa ENSPFOG00000016523 I 0.651
rfx4 Tetraodon nigroviridis ENSTNIG00000012137 I 0.651
rfx4 Takifugu rubripes ENSTRUG00000008925 I 0.651
ENSXMAG00000001638 Xiphophorus maculatus ENSXMAG00000001638 I 0.651
tetur18g01090 Tetranychus urticae tetur18g01090 I 0.651