DAPPUDRAFT_290554 (Daphnia pulex)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 DAPPUDRAFT_290554 T319322_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.708 0.708
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.708 0.708
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.708 0.708
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EFX83870 Runt 22 151

Links

Other Runt family TFs
Other Daphnia pulex TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G27760 Brachypodium distachyon BRADI3G27760 N
Bra039294 Brassica rapa Bra039294 N
LPERR10G08380 Leersia perrieri LPERR10G08380 N
OB10G19040 Oryza brachyantha OB10G19040 N
Pavir.Ib03139 Panicum virgatum Pavir.Ib03139 N
Si038535m.g Setaria italica Si038535m.g N
Sb01g020470 Sorghum bicolor Sb01g020470 N
GRMZM2G365731 Zea mays GRMZM2G365731 N