runx2 (Oryzias latipes)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSORLG00000010169 T319454_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN

NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.969 0.969
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD

HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.969 0.969
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD

HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.969 0.969
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR

YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.969 0.969
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN

NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.969 0.969
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH

DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.969 0.969
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.969 0.969
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN

NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.969 0.969
RUNX2
M11255_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.969 0.969
RUNX2
M11256_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.969 0.969
RUNX2
M11257_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.969 0.969
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN

NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.969 0.969
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN

NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.931 0.931
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN

NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.931 0.931
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN

NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.931 0.931
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH

DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.931 0.931
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM

KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.931 0.931
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV

BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.931 0.931
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN

NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.931 0.931
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN

NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.931 0.931
RUNX3
M11252_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.931 0.931
RUNX3
M11253_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.931 0.931
RUNX3
M11254_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.931 0.931
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN

NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.931 0.931
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN

NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.908 0.908
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV

BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.908 0.908
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV

BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.908 0.908
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV

BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.908 0.908
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY

RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.908 0.908
Runx1
M09633_2.00
Mus musculus
NWAACCACAR

YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.908 0.908
RUNX1
M11258_2.00
Homo sapiens
ACCRCA

TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.908 0.908
RUNX1
M11259_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.908 0.908
RUNX1
M11260_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.908 0.908
RUNX1
M11261_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.908 0.908
RUNX1
M11262_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.908 0.908
RUNX1
M11263_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.908 0.908
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM

KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.715 0.715
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV

BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.715 0.715
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA

TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.715 0.715
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR

YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.715 0.715
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000012748 Runt 68 197
ENSORLP00000012750 Runt 49 178

Links

Other Runt family TFs
Other Oryzias latipes TFs

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_06448 Capronia coronata A1O1_06448 N
A1O3_05959 Capronia epimyces A1O3_05959 N
A1O5_08664 Cladophialophora psammophila A1O5_08664 N
A1O7_06479 Cladophialophora yegresii A1O7_06479 N
A1O9_08053 Exophiala aquamarina A1O9_08053 N
ACLA_045490 Aspergillus clavatus CADACLAG00004978 N
AFUA_4G06170 Aspergillus fumigatus CADAFUAG00008511 N
ANIA_04324 Aspergillus nidulans CADANIAG00006139 N
ATEG_06807 Aspergillus terreus CADATEAG00006231 N
Bcin01g08080 Botrytis cinerea Bcin01g08080 N
BDDG_08069 Blastomyces dermatitidis BDDG_08069 N
CADAFLAG00005113 Aspergillus flavus CADAFLAG00005113 N
CADANGAG00003756 Aspergillus niger CADANGAG00003756 N
CADAORAG00008051 Aspergillus oryzae CADAORAG00008051 N
EURHEDRAFT_516818 Aspergillus ruber EURHEDRAFT_516818 N
fgenesh1_pg.00609_#_575 Aspergillus carbonarius fgenesh1_pg.00609_#_575 N
G647_06053 Cladophialophora carrionii G647_06053 N
GMDG_02083 Pseudogymnoascus destructans GMDG_02083 N
GMDG_03916 Pseudogymnoascus destructans GMDG_03916 N
GSTUM_00009240001 Tuber melanosporum GSTUM_00009240001 N
HCBG_02231 Histoplasma capsulatum HCBG_02231 N
HMPREF1120_03961 Exophiala dermatitidis HMPREF1120_03961 N
HMPREF1624_03632 Sporothrix schenckii HMPREF1624_03632 N
MBM_05804 Marssonina brunnea MBM_05804 N
NFIA_109970 Neosartorya fischeri CADNFIAG00009928 N
PAAG_04399 Paracoccidioides sp lutzii PAAG_04399 N
PABG_04201 Paracoccidioides brasiliensis PABG_04201 N
PMAA_027450 Penicillium marneffei PMAA_027450 N
PMAA_027450 Talaromyces marneffei PMAA_027450 N
PV04_06890 Capronia semiimmersa PV04_06890 N
PV05_09061 Exophiala xenobiotica PV05_09061 N
PV06_02579 Exophiala oligosperma PV06_02579 N
PV07_03724 Cladophialophora immunda PV07_03724 N
PV07_12548 Cladophialophora immunda PV07_12548 N
PV08_11376 Exophiala spinifera PV08_11376 N
PV10_08689 Exophiala mesophila PV10_08689 N
PV11_06703 Exophiala sideris PV11_06703 N
PVAR5_4132 Byssochlamys spectabilis PVAR5_4132 N
SPBR_01645 Sporothrix brasiliensis SPBR_01645 N
TSTA_071310 Talaromyces stipitatus TSTA_071310 N
VHEMI03871 Torrubiella hemipterigena VHEMI03871 N
Z517_00960 Fonsecaea pedrosoi Z517_00960 N
Z518_02769 Rhinocladiella mackenziei Z518_02769 N
Z519_03993 Cladophialophora bantiana Z519_03993 N