CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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runx2
(
Oryzias latipes
)
Runt
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00853 (Runt)
IPR013524
ENSORLG00000010169
T319454_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN
NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.969
0.969
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.969
0.969
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.969
0.969
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR
YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.969
0.969
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.969
0.969
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.969
0.969
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV
BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.969
0.969
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.969
0.969
RUNX2
M11255_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.969
0.969
RUNX2
M11256_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.969
0.969
RUNX2
M11257_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.969
0.969
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.969
0.969
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.931
0.931
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN
NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.931
0.931
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.931
0.931
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH
DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.931
0.931
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM
KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.931
0.931
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.931
0.931
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN
NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.931
0.931
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN
NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.931
0.931
RUNX3
M11252_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.931
0.931
RUNX3
M11253_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.931
0.931
RUNX3
M11254_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.931
0.931
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.931
0.931
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN
NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.908
0.908
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV
BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.908
0.908
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV
BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.908
0.908
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV
BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.908
0.908
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.908
0.908
Runx1
M09633_2.00
Mus musculus
NWAACCACAR
YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.908
0.908
RUNX1
M11258_2.00
Homo sapiens
ACCRCA
TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.908
0.908
RUNX1
M11259_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.908
0.908
RUNX1
M11260_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.908
0.908
RUNX1
M11261_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.908
0.908
RUNX1
M11262_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.908
0.908
RUNX1
M11263_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.908
0.908
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.715
0.715
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.715
0.715
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.715
0.715
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.715
0.715
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000012748
Runt
68
197
MAEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDIPDGTVVTVMAGNDENYSAELRNASGVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHR
ENSORLP00000012750
Runt
49
178
MAEIIADHPAELVRTDSPNFLCSVLPSHWRCNKTLPVAFKVVALGDIPDGTVVTVMAGNDENYSAELRNASGVMKNQVARFNDLRFVGRSGRGKSFTLTITVFTNPPQVATYHRAIKVTVDGPREPRRHR
Links
Other
Runt
family TFs
Other
Oryzias latipes
TFs
274 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
A1O1_06448
Capronia coronata
A1O1_06448
N
A1O3_05959
Capronia epimyces
A1O3_05959
N
A1O5_08664
Cladophialophora psammophila
A1O5_08664
N
A1O7_06479
Cladophialophora yegresii
A1O7_06479
N
A1O9_08053
Exophiala aquamarina
A1O9_08053
N
ACLA_045490
Aspergillus clavatus
CADACLAG00004978
N
AFUA_4G06170
Aspergillus fumigatus
CADAFUAG00008511
N
ANIA_04324
Aspergillus nidulans
CADANIAG00006139
N
ATEG_06807
Aspergillus terreus
CADATEAG00006231
N
Bcin01g08080
Botrytis cinerea
Bcin01g08080
N
BDDG_08069
Blastomyces dermatitidis
BDDG_08069
N
CADAFLAG00005113
Aspergillus flavus
CADAFLAG00005113
N
CADANGAG00003756
Aspergillus niger
CADANGAG00003756
N
CADAORAG00008051
Aspergillus oryzae
CADAORAG00008051
N
EURHEDRAFT_516818
Aspergillus ruber
EURHEDRAFT_516818
N
fgenesh1_pg.00609_#_575
Aspergillus carbonarius
fgenesh1_pg.00609_#_575
N
G647_06053
Cladophialophora carrionii
G647_06053
N
GMDG_02083
Pseudogymnoascus destructans
GMDG_02083
N
GMDG_03916
Pseudogymnoascus destructans
GMDG_03916
N
GSTUM_00009240001
Tuber melanosporum
GSTUM_00009240001
N
HCBG_02231
Histoplasma capsulatum
HCBG_02231
N
HMPREF1120_03961
Exophiala dermatitidis
HMPREF1120_03961
N
HMPREF1624_03632
Sporothrix schenckii
HMPREF1624_03632
N
MBM_05804
Marssonina brunnea
MBM_05804
N
NFIA_109970
Neosartorya fischeri
CADNFIAG00009928
N
PAAG_04399
Paracoccidioides sp lutzii
PAAG_04399
N
PABG_04201
Paracoccidioides brasiliensis
PABG_04201
N
PMAA_027450
Penicillium marneffei
PMAA_027450
N
PMAA_027450
Talaromyces marneffei
PMAA_027450
N
PV04_06890
Capronia semiimmersa
PV04_06890
N
PV05_09061
Exophiala xenobiotica
PV05_09061
N
PV06_02579
Exophiala oligosperma
PV06_02579
N
PV07_03724
Cladophialophora immunda
PV07_03724
N
PV07_12548
Cladophialophora immunda
PV07_12548
N
PV08_11376
Exophiala spinifera
PV08_11376
N
PV10_08689
Exophiala mesophila
PV10_08689
N
PV11_06703
Exophiala sideris
PV11_06703
N
PVAR5_4132
Byssochlamys spectabilis
PVAR5_4132
N
SPBR_01645
Sporothrix brasiliensis
SPBR_01645
N
TSTA_071310
Talaromyces stipitatus
TSTA_071310
N
VHEMI03871
Torrubiella hemipterigena
VHEMI03871
N
Z517_00960
Fonsecaea pedrosoi
Z517_00960
N
Z518_02769
Rhinocladiella mackenziei
Z518_02769
N
Z519_03993
Cladophialophora bantiana
Z519_03993
N