Alligator_sinensis_CCG010991.1 (Alligator sinensis)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00853 (Runt) IPR013524 Alligator_sinensis_CCG010991.1 T319646_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.987 0.987
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.987 0.987
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.987 0.987
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.987 0.987
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.987 0.987
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.987 0.987
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.987 0.987
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.987 0.987
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.987 0.987
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.987 0.987
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.987 0.987
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.987 0.987
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.973 0.973
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.973 0.973
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.973 0.973
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.973 0.973
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.973 0.973
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.973 0.973
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.973 0.973
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.973 0.973
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.973 0.973
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.973 0.973
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.973 0.973
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.973 0.973
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.947 0.947
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.947 0.947
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.947 0.947
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.947 0.947
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.947 0.947
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.947 0.947
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.947 0.947
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.947 0.947
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.947 0.947
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.947 0.947
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.947 0.947
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.947 0.947
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.773 0.773
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.773 0.773
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.773 0.773
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.773 0.773
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.733 0.733
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG010991.1 Runt 1 75

Links

Other Runt family TFs
Other Alligator sinensis TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava13701.valid.m1 Manihot esculenta cassava13701.valid.m1 N
Cagra.2194s0001 Capsella grandiflora Cagra.2194s0001 N
Bostr.10180s0008 Boechera stricta Bostr.10180s0008 N
Aquca_052_00048 Aquilegia coerulea Aquca_052_00048 N
mgf016433m Mimulus guttatus mgf016433m N
mgf015154m Mimulus guttatus mgf015154m N
mgf004750m Mimulus guttatus mgf004750m N
Cucsa.073340 Cucumis sativus Cucsa.073340 N
cassava41980.valid.m1 Manihot esculenta cassava41980.valid.m1 N
cassava13702.valid.m1 Manihot esculenta cassava13702.valid.m1 N
Carubv10020145m.g Capsella rubella Carubv10020145m.g N
30148.m001468 Ricinus communis 30148.m001468 N
Pm019567 Prunus mume Pm019567 N
Cla006897 Citrullus lanatus Cla006897 N
Ca_22625 Cicer arietinum Ca_22625 N
Ca_22622 Cicer arietinum Ca_22622 N
SIGA Vitis vinifera VIT_16s0039g00660 N
TRIUR3_34525 Triticum urartu TRIUR3_34525 N
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N
MDP0000939377 Malus domestica MDP0000939377 N
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N
chr3.CM0127.660.nc Lotus japonicus chr3.CM0127.660.nc N
PK03826.1 Cannabis sativa PK03826.1 N
Thhalv10002486m.g Eutrema salsugineum Thhalv10002486m.g N
SapurV1A.1456s0040 Salix purpurea SapurV1A.1456s0040 N
SapurV1A.1326s0010 Salix purpurea SapurV1A.1326s0010 N
Pavir.J39657 Panicum virgatum Pavir.J39657 N
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N
orange1.1g010521m.g Citrus sinensis orange1.1g010521m.g N
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N
MDP0000934360 Malus domestica MDP0000934360 N
Lus10020365.g Linum usitatissimum Lus10020365.g N
Gorai.007G247500 Gossypium raimondii Gorai.007G247500 N
Gorai.004G255000 Gossypium raimondii Gorai.004G255000 N
gene12547-v1.0-hybrid Fragaria vesca gene12547-v1.0-hybrid N
evm.TU.supercontig_3807.1 Carica papaya evm.TU.supercontig_3807.1 N
Eucgr.A02994 Eucalyptus grandis Eucgr.A02994 N
Ciclev10031289m.g Citrus clementina Ciclev10031289m.g N
GRMZM2G006736 Zea mays GRMZM2G006736 N
OLONG_000145 Oryza longistaminata OLONG_000145 N
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N
OBART08G03910 Oryza barthii OBART08G03910 N
OB08G14150 Oryza brachyantha OB08G14150 N
MTR_0172s0030 Medicago truncatula MTR_0172s0030 N
LPERR08G03850 Leersia perrieri LPERR08G03850 N
GSMUA_Achr1G10700_001 Musa acuminata GSMUA_Achr1G10700_001 N
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N
GRMZM2G543629 Zea mays GRMZM2G543629 N
OMERI08G04040 Oryza meridionalis OMERI08G04040 N
GLYMA12G01600 Glycine max GLYMA12G01600 N
GLYMA09G35750 Glycine max GLYMA09G35750 N
F775_32229 Aegilops tauschii F775_32229 N
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N
Bra008513 Brassica rapa Bra008513 N
Bo2g097550 Brassica oleracea Bo2g097550 N
BGIOSGA028041 Oryza indica BGIOSGA028041 N
SIGA Arabidopsis thaliana AT1G64860 N
POPTR_0019s06020 Populus trichocarpa POPTR_0019s06020 N
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N
TCM_025640 Theobroma cacao TCM_025640 N
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N
Si013608m.g Setaria italica Si013608m.g N
SIGA Arabidopsis lyrata scaffold_200883.1 N
Sb07g004340 Sorghum bicolor Sb07g004340 N
PRUPE_ppa004393mg Prunus persica PRUPE_ppa004393mg N
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N
OS08G0163400 Oryza sativa OS08G0163400 N
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N
OPUNC08G03810 Oryza punctata OPUNC08G03810 N
ONIVA08G03880 Oryza nivara ONIVA08G03880 N