CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SNAPOd2T00000189001
(
Oikopleura dioica
)
Runt
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00853 (Runt)
IPR013524
SNAPOd2T00000189001
T319704_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN
NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.767
0.767
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV
BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.767
0.767
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV
BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.767
0.767
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV
BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.767
0.767
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.767
0.767
Runx1
M09633_2.00
Mus musculus
NWAACCACAR
YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.767
0.767
RUNX1
M11258_2.00
Homo sapiens
ACCRCA
TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.767
0.767
RUNX1
M11259_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.767
0.767
RUNX1
M11260_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.767
0.767
RUNX1
M11261_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.767
0.767
RUNX1
M11262_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.767
0.767
RUNX1
M11263_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.767
0.767
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN
NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.733
0.733
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.733
0.733
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.733
0.733
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR
YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.733
0.733
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.733
0.733
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.733
0.733
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV
BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.733
0.733
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.733
0.733
RUNX2
M11255_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.733
0.733
RUNX2
M11256_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.733
0.733
RUNX2
M11257_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.733
0.733
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.733
0.733
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.700
0.700
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN
NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.700
0.700
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.700
0.700
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH
DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.700
0.700
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM
KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.700
0.700
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.700
0.700
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.700
0.700
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.700
0.700
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.700
0.700
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.700
0.700
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN
NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.700
0.700
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN
NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.700
0.700
RUNX3
M11252_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.700
0.700
RUNX3
M11253_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.700
0.700
RUNX3
M11254_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.700
0.700
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00000189001
Runt
1
30
MVATNPPQIAVYHRAIKITVDGPREPRSEY
Links
Other
Runt
family TFs
Other
Oikopleura dioica
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL013408
Aedes aegypti
AAEL013408
I
ENSAMEG00000010672
Ailuropoda melanoleuca
ENSAMEG00000010672
I
Alligator_sinensis_CCG021031.1
Alligator sinensis
Alligator_sinensis_CCG021031.1
I
ENSAPLG00000011215
Anas platyrhynchos
ENSAPLG00000011215
I
DEAF1
Anolis carolinensis
ENSACAG00000015102
I
GB41654
Apis mellifera
GB41654
I
Afo_R011879
Aptenodytes forsteri
Afo_R011879
I
ENSAMXG00000016516
Astyanax mexicanus
ENSAMXG00000016516
I
ACEP13992
Atta cephalotes
ACEP13992
I
BGLB009094
Biomphalaria glabrata
BGLB009094
I
BGIBMGA002019
Bombyx mori
BGIBMGA002019
I
ENSP00000371846-D1
Bos grunniens
ENSP00000371846-D1
I
fgenesh2_pg.scaffold_59000072
Branchiostoma floridae
fgenesh2_pg.scaffold_59000072
I
fgenesh2_pg.scaffold_59000067
Branchiostoma floridae
fgenesh2_pg.scaffold_59000067
I
Brh_R009745
Buceros rhinoceros
Brh_R009745
I
DEAF1
Callithrix jacchus
ENSCJAG00000011996
I
Aan_R010721
Calypte anna
Aan_R010721
I
Cflo_07037--XP_395757.2_APIME
Camponotus floridanus
Cflo_07037--XP_395757.2_APIME
I
DEAF1
Canis familiaris
ENSCAFG00000006569
I
CapteG228571
Capitella teleta
CapteG228571
I
DEAF1
Cavia porcellus
ENSCPOG00000006073
I
Cmyd_10004045
Chelonia mydas
Cmyd_10004045
I
ENSCSAG00000010763
Chlorocebus sabaeus
ENSCSAG00000010763
I
CGI_10012910
Crassostrea gigas
CGI_10012910
I
CpipJ_CPIJ007045
Culex pipiens
CpipJ_CPIJ007045
I
CPIJ007045
Culex quinquefasciatus
CPIJ007045
I
KGM_18605
Danaus plexippus
KGM_18605
I
DEAF1
Dasypus novemcinctus
ENSDNOG00000000274
I
YQE_06816
Dendroctonus ponderosae
YQE_06816
I
Deaf1
Dipodomys ordii
ENSDORG00000015737
I
DEAF1
Equus caballus
ENSECAG00000010151
I
DEAF1
Felis catus
ENSFCAG00000007591
I
ENSFALG00000010923
Ficedula albicollis
ENSFALG00000010923
I
ENSGMOG00000000222
Gadus morhua
ENSGMOG00000000222
I
ENSGALG00000005089
Gallus gallus
ENSGALG00000005089
I
deaf1
Gasterosteus aculeatus
ENSGACG00000008942
I
Gfo_R011899
Geospiza fortis
Gfo_R011899
I
DEAF1
Gorilla gorilla
ENSGGOG00000014020
I
HHAL006904-PA
Halyomorpha halys
HHAL006904-PA
I
Hsal_03559--XP_395757.2_APIME
Harpegnathos saltator
Hsal_03559--XP_395757.2_APIME
I
HMEL013517
Heliconius melpomene
HMEL013517
I
DEAF1
Homo sapiens
ENSG00000177030
I
ENSSTOG00000004165
Ictidomys tridecemlineatus
ENSSTOG00000004165
I
ENSLACG00000014207
Latimeria chalumnae
ENSLACG00000014207
I
ENSLOCG00000002360
Lepisosteus oculatus
ENSLOCG00000002360
I
LDEC013410
Leptinotarsa decemlineata
LDEC013410
I
DEAF1
Loxodonta africana
ENSLAFG00000023242
I
ENSP00000371846
Macaca fascicularis
ENSP00000371846
I
DEAF1
Macaca mulatta
ENSMMUG00000002660
I
ENSMEUG00000005016
Macropus eugenii
ENSMEUG00000005016
I
DEAF1
Meleagris gallopavo
ENSMGAG00000003765
I
MCINX013640
Melitaea cinxia
MCINX013640
I
DEAF1
Microcebus murinus
ENSMICG00000001602
I
ENSMPUG00000008992
Mustela putorius furo
ENSMPUG00000008992
I
Deaf1
Mus musculus
ENSMUSG00000058886
I
Myotis_brandtii_DEAF1_10008461
Myotis brandtii
Myotis_brandtii_DEAF1_10008461
I
DEAF1
Myotis lucifugus
ENSMLUG00000026576
I
NV18168
Nasonia vitripennis
NV18168
I
ENSNLEG00000008479
Nomascus leucogenys
ENSNLEG00000008479
I
ENSOPRG00000002240
Ochotona princeps
ENSOPRG00000002240
I
Ocbimv22013386m.g
Octopus bimaculoides
Ocbimv22013386m.g
I
Ogr05554
Ophisaurus gracilis
Ogr05554
I
ENSONIG00000003936
Oreochromis niloticus
ENSONIG00000003936
I
deaf1
Oryzias latipes
ENSORLG00000019407
I
DEAF1
Otolemur garnettii
ENSOGAG00000006434
I
ENSOARG00000006285
Ovis aries
ENSOARG00000006285
I
DEAF1
Pan troglodytes
ENSPTRG00000003129
D
ENSPANG00000008597
Papio anubis
ENSPANG00000008597
I
ENSPSIG00000016545
Pelodiscus sinensis
ENSPSIG00000016545
I
ENSPMAG00000004264
Petromyzon marinus
ENSPMAG00000004264
I
ENSPFOG00000014257
Poecilia formosa
ENSPFOG00000014257
I
Pvit_08245
Pogona vitticeps
Pvit_08245
I
DEAF1
Pteropus vampyrus
ENSPVAG00000006883
I
Deaf1
Rattus norvegicus
ENSRNOG00000017960
I
ENSSHAG00000002042
Sarcophilus harrisii
ENSSHAG00000002042
I
SMAR003119
Strigamia maritima
SMAR003119
I
DEAF1
Sus scrofa
ENSSSCG00000012850
I
DEAF1
Taeniopygia guttata
ENSTGUG00000007185
I
deaf1
Takifugu rubripes
ENSTRUG00000002931
I
deaf1
Tetraodon nigroviridis
ENSTNIG00000016068
I
TC000085
Tribolium castaneum
TC000085
I
DEAF1
Tursiops truncatus
ENSTTRG00000015418
I
deaf1
Xenopus tropicalis
XB-GENE-1216227
I
ENSXMAG00000013352
Xiphophorus maculatus
ENSXMAG00000013352
I
L798_01684
Zootermopsis nevadensis
L798_01684
I