CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PPAI007797
(
Phlebotomus papatasi
)
Runt
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00853 (Runt)
IPR013524
PPAI007797
T319782_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.825
0.825
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.825
0.825
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.825
0.825
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.825
0.825
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN
NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.725
0.725
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.725
0.725
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.725
0.725
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR
YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.725
0.725
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.725
0.725
run
M06444_2.00
Drosophila melanogaster
WAACCGCAR
YTGCGGTTW
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
0.725
0.725
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.725
0.725
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV
BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.725
0.725
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.725
0.725
RUNX2
M11255_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.725
0.725
RUNX2
M11256_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.725
0.725
RUNX2
M11257_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.725
0.725
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.725
0.725
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.700
0.700
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN
NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.700
0.700
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.700
0.700
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH
DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.700
0.700
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM
KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.700
0.700
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.700
0.700
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN
NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.700
0.700
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV
BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.700
0.700
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN
NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.700
0.700
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV
BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.700
0.700
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN
NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.700
0.700
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV
BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.700
0.700
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.700
0.700
Runx1
M09633_2.00
Mus musculus
NWAACCACAR
YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.700
0.700
RUNX1
M11258_2.00
Homo sapiens
ACCRCA
TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.700
0.700
RUNX1
M11259_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.700
0.700
RUNX1
M11260_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.700
0.700
RUNX1
M11261_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.700
0.700
RUNX1
M11262_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.700
0.700
RUNX1
M11263_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.700
0.700
RUNX3
M11252_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.700
0.700
RUNX3
M11253_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.700
0.700
RUNX3
M11254_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.700
0.700
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPAI007797-PA
Runt
2
41
RYRKSFTLTITVSTTPPQVTTYSKAIKVTVDGPREPRSKT
Links
Other
Runt
family TFs
Other
Phlebotomus papatasi
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_1AL_9ADA7A031
Triticum aestivum
Traes_1AL_9ADA7A031
I
OPUNC01G28510
Oryza punctata
OPUNC01G28510
I
OPUNC05G21470
Oryza punctata
OPUNC05G21470
I
ORGLA01G0238400
Oryza glaberrima
ORGLA01G0238400
I
ORUFI01G31840
Oryza rufipogon
ORUFI01G31840
I
ORUFI05G25660
Oryza rufipogon
ORUFI05G25660
I
OS01G0714800
Oryza sativa
OS01G0714800
I
OS05G0537100
Oryza sativa
OS05G0537100
I
Sb03g032800
Sorghum bicolor
Sb03g032800
I
Sb09g026830
Sorghum bicolor
Sb09g026830
I
Si004464m.g
Setaria italica
Si004464m.g
I
Si023194m.g
Setaria italica
Si023194m.g
I
ONIVA05G24830
Oryza nivara
ONIVA05G24830
I
Traes_1DL_D550418641
Triticum aestivum
Traes_1DL_D550418641
I
TRAES3BF111700140CFD_g
Triticum aestivum
TRAES3BF111700140CFD_g
I
Traes_3DL_DF0D3F3FE
Triticum aestivum
Traes_3DL_DF0D3F3FE
I
TRIUR3_01979
Triticum urartu
TRIUR3_01979
I
TRIUR3_33662
Triticum urartu
TRIUR3_33662
I
Ciclev10026733m.g
Citrus clementina
Ciclev10026733m.g
I
orange1.1g029257m.g
Citrus sinensis
orange1.1g029257m.g
I
Pavir.Ca01747
Panicum virgatum
Pavir.Ca01747
I
Pavir.Ea02619
Panicum virgatum
Pavir.Ea02619
I
Pavir.Eb02766
Panicum virgatum
Pavir.Eb02766
I
Pavir.J03284
Panicum virgatum
Pavir.J03284
I
MLOC_10264
Hordeum vulgare
MLOC_10264
I
BGIOSGA020266
Oryza indica
BGIOSGA020266
I
BRADI2G18530
Brachypodium distachyon
BRADI2G18530
I
F775_44085
Aegilops tauschii
F775_44085
I
F775_52480
Aegilops tauschii
F775_52480
I
GRMZM2G101405
Zea mays
GRMZM2G101405
I
GRMZM2G137802
Zea mays
GRMZM2G137802
I
GRMZM5G863420
Zea mays
GRMZM5G863420
I
GSMUA_Achr3G20450_001
Musa acuminata
GSMUA_Achr3G20450_001
I
GSMUA_Achr7G09680_001
Musa acuminata
GSMUA_Achr7G09680_001
I
LPERR01G24650
Leersia perrieri
LPERR01G24650
I
LPERR05G19900
Leersia perrieri
LPERR05G19900
I
BGIOSGA000921
Oryza indica
BGIOSGA000921
I
MLOC_81131
Hordeum vulgare
MLOC_81131
I
OB01G37710
Oryza brachyantha
OB01G37710
I
OB05G31630
Oryza brachyantha
OB05G31630
I
OBART01G28750
Oryza barthii
OBART01G28750
I
OBART01G28780
Oryza barthii
OBART01G28780
I
OBART05G24090
Oryza barthii
OBART05G24090
I
OGLUM01G32750
Oryza glumaepatula
OGLUM01G32750
I
OMERI01G26280
Oryza meridionalis
OMERI01G26280
I
OMERI01G26720
Oryza meridionalis
OMERI01G26720
I
ONIVA01G32840
Oryza nivara
ONIVA01G32840
N