CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PPAI007797
(
Phlebotomus papatasi
)
Runt
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00853 (Runt)
IPR013524
PPAI007797
T319782_2.00
Vectorbase (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
lz
M03964_2.00
Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_1
0.825
0.825
lz
M03965_2.00
Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD
SELEX
Nitta et al.(2015)
lz_2
0.825
0.825
lz
M03966_2.00
Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW
SELEX
Nitta et al.(2015)
lz_3
0.825
0.825
lz
M03967_2.00
Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD
SELEX
Nitta et al.(2015)
lz_4
0.825
0.825
Runx2
M01307_2.00
Mus musculus
NHDACCRCAN
NTGYGGTHDN
PBM
Lambert et al.(2019)
pTH9764
0.725
0.725
RUNX2
M03468_2.00
Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX2_1
0.725
0.725
RUNX2
M03469_2.00
Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX2_2
0.725
0.725
RUNX2
M03470_2.00
Homo sapiens
WAACCRCAR
YTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX2_3
0.725
0.725
RUNX2
M05733_2.00
Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN
SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX
0.725
0.725
run
M06444_2.00
Drosophila melanogaster
WAACCGCAR
YTGCGGTTW
B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300
0.725
0.725
RUNX2
M09370_2.00
Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK
Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A
0.725
0.725
Runx2
M09373_2.00
Mus musculus
VWRACCACARVV
BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A
0.725
0.725
RUNX2
M09630_2.00
Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN
Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889
0.725
0.725
RUNX2
M11255_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q3
0.725
0.725
RUNX2
M11256_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML3_Q6
0.725
0.725
RUNX2
M11257_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OSF2_Q6
0.725
0.725
RUNX2
M05734_2.00
Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN
SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX
0.725
0.725
RUNX3
M03464_2.00
Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD
SELEX
Jolma et al.(2013)
RUNX3_1
0.700
0.700
RUNX3
M03465_2.00
Homo sapiens
WAACCRCARN
NYTGYGGTTW
SELEX
Jolma et al.(2013)
RUNX3_2
0.700
0.700
RUNX3
M03466_2.00
Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD
SELEX
Jolma et al.(2013)
RUNX3_3
0.700
0.700
RUNX3
M03467_2.00
Homo sapiens
HRACCRCAAH
DTTGYGGTYD
SELEX
Jolma et al.(2013)
RUNX3_4
0.700
0.700
RUNX3
M02751_2.00
Homo sapiens
WACCRCAM
KTGYGGTW
SELEX
Jolma et al.(2010)
RUNX3_monomer
0.700
0.700
RUNX3
M05731_2.00
Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR
SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX
0.700
0.700
Runx1
M08163_2.00
Mus musculus
HRRCCACARVN
NBYTGTGGYYD
ChIP-seq
Mathelier et al.(2014)
MA0002.2
0.700
0.700
RUNX1
M09371_2.00
Homo sapiens
NWAACCACARV
BYTGTGGTTWN
Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A
0.700
0.700
RUNX3
M09369_2.00
Homo sapiens
HAACCACARN
NYTGTGGTTD
Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A
0.700
0.700
Runx1
M09372_2.00
Mus musculus
VWRACCACARVV
BBYTGTGGTYWB
Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A
0.700
0.700
Runx3
M09374_2.00
Mus musculus
NHRACCACARVN
NBYTGTGGTYDN
Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A
0.700
0.700
RUNX1
M09632_2.00
Homo sapiens
HAACCACADV
BHTGTGGTTD
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180
0.700
0.700
RUNX1
M09631_2.00
Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB
Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954
0.700
0.700
Runx1
M09633_2.00
Mus musculus
NWAACCACAR
YTGTGGTTWN
Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178
0.700
0.700
RUNX1
M11258_2.00
Homo sapiens
ACCRCA
TGYGGT
Transfac
Matys et al.(2006)
V$AML1_01
0.700
0.700
RUNX1
M11259_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_01
0.700
0.700
RUNX1
M11260_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4_02
0.700
0.700
RUNX1
M11261_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q4
0.700
0.700
RUNX1
M11262_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q5
0.700
0.700
RUNX1
M11263_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML1_Q6
0.700
0.700
RUNX3
M11252_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3_01
0.700
0.700
RUNX3
M11253_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q3
0.700
0.700
RUNX3
M11254_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$AML2_Q4
0.700
0.700
RUNX3
M05732_2.00
Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD
SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PPAI007797-PA
Runt
2
41
RYRKSFTLTITVSTTPPQVTTYSKAIKVTVDGPREPRSKT
Links
Other
Runt
family TFs
Other
Phlebotomus papatasi
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29603.m000536
Ricinus communis
29603.m000536
I
Al_scaffold_0409_3
Arabidopsis lyrata
Al_scaffold_0409_3
I
AT4G17810
Arabidopsis thaliana
AT4G17810
I
BGIOSGA015610
Oryza indica
BGIOSGA015610
I
BGIOSGA018378
Oryza indica
BGIOSGA018378
I
BGIOSGA033510
Oryza indica
BGIOSGA033510
I
Bo1g017920
Brassica oleracea
Bo1g017920
I
Bo1g102390
Brassica oleracea
Bo1g102390
I
Bo3g003640
Brassica oleracea
Bo3g003640
I
Bo9g176590
Brassica oleracea
Bo9g176590
I
Bostr.13129s0367
Boechera stricta
Bostr.13129s0367
I
Bostr.19424s0332
Boechera stricta
Bostr.19424s0332
I
Bostr.25993s0539
Boechera stricta
Bostr.25993s0539
I
Bostr.30275s0246
Boechera stricta
Bostr.30275s0246
I
Bra005874
Brassica rapa
Bra005874
I
Bra009160
Brassica rapa
Bra009160
I
Bra013257
Brassica rapa
Bra013257
I
Bra023759
Brassica rapa
Bra023759
I
BRADI1G52490
Brachypodium distachyon
BRADI1G52490
I
BRADI3G55760
Brachypodium distachyon
BRADI3G55760
I
Cagra.2117s0055
Capsella grandiflora
Cagra.2117s0055
I
Cagra.2636s0028
Capsella grandiflora
Cagra.2636s0028
I
Cagra.3356s0074
Capsella grandiflora
Cagra.3356s0074
I
Cagra.3462s0001
Capsella grandiflora
Cagra.3462s0001
I
Carubv10002935m.g
Capsella rubella
Carubv10002935m.g
I
Carubv10006881m.g
Capsella rubella
Carubv10006881m.g
I
Carubv10016073m.g
Capsella rubella
Carubv10016073m.g
I
Carubv10024766m.g
Capsella rubella
Carubv10024766m.g
I
cassava14614.m1
Manihot esculenta
cassava14614.m1
I
cassava22028.m1
Manihot esculenta
cassava22028.m1
I
cassava3359.m1
Manihot esculenta
cassava3359.m1
I
cassava40050.m1
Manihot esculenta
cassava40050.m1
I
Ca_12901
Cicer arietinum
Ca_12901
I
chr1.CM0147.870.nc
Lotus japonicus
chr1.CM0147.870.nc
I
Ciclev10006961m.g
Citrus clementina
Ciclev10006961m.g
I
Cla008944
Citrullus lanatus
Cla008944
I
Cla016442
Citrullus lanatus
Cla016442
I
Cla021878
Citrullus lanatus
Cla021878
I
Cucsa.255130
Cucumis sativus
Cucsa.255130
I
Cucsa.313240
Cucumis sativus
Cucsa.313240
I
Cucsa.321760
Cucumis sativus
Cucsa.321760
I
evm.TU.supercontig_44.99
Carica papaya
evm.TU.supercontig_44.99
I
e_gw1.1.457.1
Physcomitrella patens
e_gw1.1.457.1
I
e_gw1.14.264.1
Physcomitrella patens
e_gw1.14.264.1
I
e_gw1.186.49.1
Physcomitrella patens
e_gw1.186.49.1
I
e_gw1.6.268.1
Physcomitrella patens
e_gw1.6.268.1
I
F775_00917
Aegilops tauschii
F775_00917
I
F775_21953
Aegilops tauschii
F775_21953
I
gene08240-v1.0-hybrid
Fragaria vesca
gene08240-v1.0-hybrid
I
GLYMA07G16290
Glycine max
GLYMA07G16290
I
GLYMA11G34285
Glycine max
GLYMA11G34285
I
GLYMA12G35930
Glycine max
GLYMA12G35930
I
GLYMA13G34450
Glycine max
GLYMA13G34450
I
Gorai.005G047800
Gossypium raimondii
Gorai.005G047800
I
Gorai.006G247700
Gossypium raimondii
Gorai.006G247700
I
Gorai.008G226800
Gossypium raimondii
Gorai.008G226800
I
Gorai.012G106300
Gossypium raimondii
Gorai.012G106300
I
GRMZM2G000126
Zea mays
GRMZM2G000126
I
GRMZM2G137736
Zea mays
GRMZM2G137736
I
GRMZM2G344974
Zea mays
GRMZM2G344974
I
GRMZM2G409452
Zea mays
GRMZM2G409452
I
GRMZM2G443109
Zea mays
GRMZM2G443109
I
GSMUA_Achr7G26850_001
Musa acuminata
GSMUA_Achr7G26850_001
I
LjSGA_038753.2
Lotus japonicus
LjSGA_038753.2
I
LPERR04G01660
Leersia perrieri
LPERR04G01660
I
LPERR05G08090
Leersia perrieri
LPERR05G08090
I
Lus10000705.g
Linum usitatissimum
Lus10000705.g
I
Lus10021213.g
Linum usitatissimum
Lus10021213.g
I
Lus10022204.g
Linum usitatissimum
Lus10022204.g
I
Lus10022206.g
Linum usitatissimum
Lus10022206.g
I
Lus10024875.g
Linum usitatissimum
Lus10024875.g
I
MDP0000225209
Malus domestica
MDP0000225209
I
mg013419m
Mimulus guttatus
mg013419m
I
mgf024356m
Mimulus guttatus
mgf024356m
I
MLOC_76482
Hordeum vulgare
MLOC_76482
I
MTR_1g070265
Medicago truncatula
MTR_1g070265
I
MTR_7g063220
Medicago truncatula
MTR_7g063220
I
OB02G10110
Oryza brachyantha
OB02G10110
I
OB02G44430
Oryza brachyantha
OB02G44430
I
OB04G12040
Oryza brachyantha
OB04G12040
I
OB05G18710
Oryza brachyantha
OB05G18710
I
OBART04G02370
Oryza barthii
OBART04G02370
I
OBART05G10090
Oryza barthii
OBART05G10090
I
OBART11G23770
Oryza barthii
OBART11G23770
I
OGLUM04G02100
Oryza glumaepatula
OGLUM04G02100
I
OGLUM05G10360
Oryza glumaepatula
OGLUM05G10360
I
OGLUM11G22950
Oryza glumaepatula
OGLUM11G22950
I
OLONG_005038
Oryza longistaminata
OLONG_005038
I
OLONG_022667
Oryza longistaminata
OLONG_022667
I
OLONG_023754
Oryza longistaminata
OLONG_023754
I
OMERI04G02610
Oryza meridionalis
OMERI04G02610
I
OMERI07G13080
Oryza meridionalis
OMERI07G13080
I
ONIVA04G01910
Oryza nivara
ONIVA04G01910
I
ONIVA06G26970
Oryza nivara
ONIVA06G26970
I
ONIVA11G23290
Oryza nivara
ONIVA11G23290
I
OPUNC05G08760
Oryza punctata
OPUNC05G08760
I
OPUNC11G05640
Oryza punctata
OPUNC11G05640
I
orange1.1g041626m.g
Citrus sinensis
orange1.1g041626m.g
I
ORGLA05G0088100
Oryza glaberrima
ORGLA05G0088100
I
ORUFI04G03150
Oryza rufipogon
ORUFI04G03150
I
ORUFI05G10920
Oryza rufipogon
ORUFI05G10920
I
ORUFI11G25670
Oryza rufipogon
ORUFI11G25670
I
OS04G0168100
Oryza sativa
OS04G0168100
I
OS05G0286100
Oryza sativa
OS05G0286100
I
OS11G0707300
Oryza sativa
OS11G0707300
I
Pavir.Aa03593
Panicum virgatum
Pavir.Aa03593
I
Pavir.Ab00024
Panicum virgatum
Pavir.Ab00024
I
Pavir.Ab03315
Panicum virgatum
Pavir.Ab03315
I
Pavir.Ba02387
Panicum virgatum
Pavir.Ba02387
I
Pavir.Bb00955
Panicum virgatum
Pavir.Bb00955
I
Pavir.Gb02516
Panicum virgatum
Pavir.Gb02516
I
Pavir.J31403
Panicum virgatum
Pavir.J31403
I
PDK_20s1313421g001
Phoenix dactylifera
PDK_20s1313421g001
I
PDK_20s1360411g001
Phoenix dactylifera
PDK_20s1360411g001
I
PGSC0003DMG400017271
Solanum tuberosum
PGSC0003DMG400017271
I
PGSC0003DMG400040225
Solanum tuberosum
PGSC0003DMG400040225
I
Pm009420
Prunus mume
Pm009420
I
POPTR_0002s04260
Populus trichocarpa
POPTR_0002s04260
I
POPTR_0008s16390
Populus trichocarpa
POPTR_0008s16390
I
POPTR_0010s08530
Populus trichocarpa
POPTR_0010s08530
I
POPTR_0016s10480
Populus trichocarpa
POPTR_0016s10480
I
PRUPE_ppa015007mg
Prunus persica
PRUPE_ppa015007mg
I
RBE
Arabidopsis thaliana
AT5G06070
D
RBE
Arabidopsis lyrata
fgenesh2_kg.6__542__AT5G06070.1
I
SapurV1A.0006s1030
Salix purpurea
SapurV1A.0006s1030
I
SapurV1A.0007s0790
Salix purpurea
SapurV1A.0007s0790
I
SapurV1A.0007s0800
Salix purpurea
SapurV1A.0007s0800
I
SapurV1A.0292s0190
Salix purpurea
SapurV1A.0292s0190
I
SapurV1A.0292s0200
Salix purpurea
SapurV1A.0292s0200
I
SapurV1A.0378s0150
Salix purpurea
SapurV1A.0378s0150
I
Sb02g009930
Sorghum bicolor
Sb02g009930
I
Sb04g037590
Sorghum bicolor
Sb04g037590
I
Sb06g001730
Sorghum bicolor
Sb06g001730
I
scaffold_403098.1
Arabidopsis lyrata
scaffold_403098.1
I
Si011797m.g
Setaria italica
Si011797m.g
I
Si019050m.g
Setaria italica
Si019050m.g
I
Si019563m.g
Setaria italica
Si019563m.g
I
Si024070m.g
Setaria italica
Si024070m.g
I
Si032478m.g
Setaria italica
Si032478m.g
I
Solyc06g053720.1
Solanum lycopersicum
Solyc06g053720.1
I
Solyc09g089590.1
Solanum lycopersicum
Solyc09g089590.1
I
SUP
Arabidopsis thaliana
AT3G23130
I
SUP
Arabidopsis lyrata
fgenesh2_kg.3__2524__AT3G23130.1
I
TCM_021875
Theobroma cacao
TCM_021875
I
Thhalv10015420m.g
Eutrema salsugineum
Thhalv10015420m.g
I
Thhalv10017870m.g
Eutrema salsugineum
Thhalv10017870m.g
I
Thhalv10021992m.g
Eutrema salsugineum
Thhalv10021992m.g
I
Traes_1AL_80D0BD0DC
Triticum aestivum
Traes_1AL_80D0BD0DC
I
Traes_2AS_099955797
Triticum aestivum
Traes_2AS_099955797
I
Traes_2BS_0544D9D4B
Triticum aestivum
Traes_2BS_0544D9D4B
I
Traes_2DS_035AA95E3
Triticum aestivum
Traes_2DS_035AA95E3
I
TRIUR3_03721
Triticum urartu
TRIUR3_03721
I
TRIUR3_04794
Triticum urartu
TRIUR3_04794
I
TRIUR3_25222
Triticum urartu
TRIUR3_25222
I
VIT_05s0049g00070
Vitis vinifera
VIT_05s0049g00070
I
VIT_05s0049g00080
Vitis vinifera
VIT_05s0049g00080
I
ZFP11
Arabidopsis thaliana
AT2G42410
I