Bra008153 (Brassica rapa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bra008153 T319949_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.816 0.816
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.816 0.816
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra008153.1-P RWP-RK 119 167

Links

Other RWP-RK family TFs
Other Brassica rapa TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra015907 Brassica rapa Bra015907 I 0.939
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.898
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.878
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.878
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.857
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.857
RKD1 Arabidopsis thaliana AT1G18790 I 0.837
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.837
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.837
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.822
RKD2 Arabidopsis thaliana AT1G74480 D 0.816
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.816
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.816
Pm024905 Prunus mume Pm024905 I 0.816
mg020279m Mimulus guttatus mg020279m I 0.816
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.816
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.816
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.816
Cla019404 Citrullus lanatus Cla019404 I 0.796
30138.m004071 Ricinus communis 30138.m004071 I 0.796
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.796
MDP0000261199 Malus domestica MDP0000261199 I 0.796
MDP0000266172 Malus domestica MDP0000266172 I 0.796
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.796
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.776
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.776
TCM_014009 Theobroma cacao TCM_014009 I 0.776
Ca_13151 Cicer arietinum Ca_13151 I 0.776
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.776
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.755
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.755
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.735
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.735
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.735
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.735
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.735
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.735
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.735
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.735
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.735
OS06G0228950 Oryza sativa OS06G0228950 I 0.735
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.735
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.735
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.735
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.735
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.735
Genemark1.7281_g Coccomyxa subellipsoidea C169 Genemark1.7281_g I 0.731
Bo7g064180 Brassica oleracea Bo7g064180 I 0.714
Bo8g068090 Brassica oleracea Bo8g068090 I 0.714
Bra012122 Brassica rapa Bra012122 I 0.714
Bra016542 Brassica rapa Bra016542 I 0.714
Bra037130 Brassica rapa Bra037130 N 0.714
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.714
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.714
OB06G17750 Oryza brachyantha OB06G17750 I 0.714
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.714
Si008273m.g Setaria italica Si008273m.g I 0.714
Ca_27191 Cicer arietinum Ca_27191 I 0.714
mgf022310m Mimulus guttatus mgf022310m I 0.714
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.714
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.714
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.703
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.703