scaffold_103100001.1 (Arabidopsis lyrata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 scaffold_103100001.1 T320791_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.714 0.714
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_103100001.1 RWP-RK 69 117

Links

Other RWP-RK family TFs
Other Arabidopsis lyrata TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 1.000
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 1.000
RKD3 Arabidopsis thaliana AT5G66990 N 0.959
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.959
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N 0.918
Carubv10027579m.g Capsella rubella Carubv10027579m.g N 0.918
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.878
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.816
MDP0000261199 Malus domestica MDP0000261199 I 0.816
MDP0000266172 Malus domestica MDP0000266172 I 0.816
Bo7g064180 Brassica oleracea Bo7g064180 I 0.796
Bra012122 Brassica rapa Bra012122 I 0.796
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.796
Pm024905 Prunus mume Pm024905 I 0.796
mg020279m Mimulus guttatus mg020279m I 0.796
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.796
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.796
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.796
RKD1 Arabidopsis thaliana AT1G18790 I 0.776
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.776
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.776
TCM_014009 Theobroma cacao TCM_014009 I 0.776
Cla019404 Citrullus lanatus Cla019404 I 0.776
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.776
mgf022310m Mimulus guttatus mgf022310m I 0.776
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.776
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.757
Bra037130 Brassica rapa Bra037130 N 0.755
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.755
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.755
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.755
OB06G17750 Oryza brachyantha OB06G17750 I 0.755
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.755
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.755
Ca_13151 Cicer arietinum Ca_13151 I 0.755
30138.m004071 Ricinus communis 30138.m004071 I 0.755
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 0.755
Carubv10011133m.g Capsella rubella Carubv10011133m.g I 0.755
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.755
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.755
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.735
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.735
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.735
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.735
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.735
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.735
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.735
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.735
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.735
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.735
OS06G0228950 Oryza sativa OS06G0228950 I 0.735
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.735
Si008273m.g Setaria italica Si008273m.g I 0.735
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.735
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.735
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.735
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.735
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.735
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.735
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.735
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.735
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.730
RKD2 Arabidopsis thaliana AT1G74480 D 0.714
F775_07483 Aegilops tauschii F775_07483 I 0.714
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.714
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.714
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.714
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.714
gene12898-v1.0-hybrid Fragaria vesca gene12898-v1.0-hybrid N 0.714
Bo9g020450 Brassica oleracea Bo9g020450 N 0.702