Si020172m.g (Setaria italica)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Si020172m.g T320823_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.703 0.703
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si020172m RWP-RK 1 37

Links

Other RWP-RK family TFs
Other Setaria italica TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Aa00708 Panicum virgatum Pavir.Aa00708 I 0.865
Pavir.Ab02992 Panicum virgatum Pavir.Ab02992 I 0.865
F775_07483 Aegilops tauschii F775_07483 I 0.838
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.838
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.838
Si008273m.g Setaria italica Si008273m.g I 0.838
Traes_7DS_405F08A53 Triticum aestivum Traes_7DS_405F08A53 I 0.838
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.838
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.838
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.838
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.811
LPERR06G07570 Leersia perrieri LPERR06G07570 I 0.811
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.811
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.811
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.811
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.811
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.811
OS06G0228950 Oryza sativa OS06G0228950 I 0.811
Sb04g028040 Sorghum bicolor Sb04g028040 N 0.811
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.784
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.784
OB02G39310 Oryza brachyantha OB02G39310 I 0.784
OPUNC02G29870 Oryza punctata OPUNC02G29870 I 0.784
Si019159m.g Setaria italica Si019159m.g N 0.784
Ca_13151 Cicer arietinum Ca_13151 I 0.784
mg020279m Mimulus guttatus mg020279m I 0.784
Pavir.Ea01492 Panicum virgatum Pavir.Ea01492 N 0.784
Pavir.Eb01347 Panicum virgatum Pavir.Eb01347 N 0.784
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.784
RKD1 Arabidopsis thaliana AT1G18790 I 0.757
BRADI2G40920 Brachypodium distachyon BRADI2G40920 N 0.757
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.757
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.757
OGLUM01G22860 Oryza glumaepatula OGLUM01G22860 N 0.757
Si005102m.g Setaria italica Si005102m.g N 0.757
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.757
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.757
Cla019404 Citrullus lanatus Cla019404 I 0.757
30138.m004071 Ricinus communis 30138.m004071 I 0.757
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.757
MDP0000261199 Malus domestica MDP0000261199 I 0.757
MDP0000266172 Malus domestica MDP0000266172 I 0.757
AC207342.3_FG001 Zea mays AC207342.3_FG001 N 0.730
RKD4 Arabidopsis thaliana AT5G53040 N 0.730
BGIOSGA001434 Oryza indica BGIOSGA001434 N 0.730
Bra022622 Brassica rapa Bra022622 N 0.730
F775_00225 Aegilops tauschii F775_00225 I 0.730
F775_03178 Aegilops tauschii F775_03178 N 0.730
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.730
fgenesh1_pm.C_scaffold_8001005 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001005 N 0.730
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.730
GSMUA_AchrUn_randomG11290_001 Musa acuminata GSMUA_AchrUn_randomG11290_001 N 0.730
LPERR01G16660 Leersia perrieri LPERR01G16660 N 0.730
OBART01G19230 Oryza barthii OBART01G19230 N 0.730
OLONG_016325 Oryza longistaminata OLONG_016325 I 0.730
ONIVA01G21910 Oryza nivara ONIVA01G21910 N 0.730
OPUNC01G19590 Oryza punctata OPUNC01G19590 N 0.730
ORUFI01G21630 Oryza rufipogon ORUFI01G21630 N 0.730
POPTR_0015s01410 Populus trichocarpa POPTR_0015s01410 N 0.730
Sb03g025130 Sorghum bicolor Sb03g025130 N 0.730
SELMODRAFT_73109 Selaginella moellendorffii SELMODRAFT_73109 N 0.730
SELMODRAFT_73110 Selaginella moellendorffii SELMODRAFT_73110 N 0.730
TCM_014009 Theobroma cacao TCM_014009 I 0.730
Traes_6DL_8ECBBC867 Triticum aestivum Traes_6DL_8ECBBC867 I 0.730
Ca_27191 Cicer arietinum Ca_27191 I 0.730
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.730
fgenesh1_pg.scaffold_823000001 Physcomitrella patens fgenesh1_pg.scaffold_823000001 N 0.730
Bostr.26833s0978 Boechera stricta Bostr.26833s0978 N 0.730
Cagra.0084s0050 Capsella grandiflora Cagra.0084s0050 N 0.730
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N 0.730
Carubv10027579m.g Capsella rubella Carubv10027579m.g N 0.730
Carubv10028317m.g Capsella rubella Carubv10028317m.g N 0.730
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.730
SapurV1A.0498s0250 Salix purpurea SapurV1A.0498s0250 N 0.730
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.730
PDK_20s1788591g001 Phoenix dactylifera PDK_20s1788591g001 N 0.730
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.703
RKD2 Arabidopsis thaliana AT1G74480 D 0.703
Bo9g108730 Brassica oleracea Bo9g108730 N 0.703
mgf025545m Mimulus guttatus mgf025545m N 0.703
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.703
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.703
Thhalv10015321m.g Eutrema salsugineum Thhalv10015321m.g N 0.703
chr2.CM0272.20.nd Lotus japonicus chr2.CM0272.20.nd N 0.703