Carubv10011133m.g (Capsella rubella)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02042 (RWP-RK) IPR003035 Carubv10011133m.g T321093_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.837 0.837
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.837 0.837
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10011133m RWP-RK 129 177

Links

Other RWP-RK family TFs
Other Capsella rubella TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.4153s0001 Capsella grandiflora Cagra.4153s0001 I 1.000
RKD1 Arabidopsis thaliana AT1G18790 I 0.898
fgenesh2_kg.1__2057__AT1G18790.1 Arabidopsis lyrata fgenesh2_kg.1__2057__AT1G18790.1 I 0.898
RKD2 Arabidopsis thaliana AT1G74480 D 0.837
Bo8g068090 Brassica oleracea Bo8g068090 I 0.837
Bra016542 Brassica rapa Bra016542 I 0.837
fgenesh1_pg.C_scaffold_2001738 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001738 I 0.837
Thhalv10019554m.g Eutrema salsugineum Thhalv10019554m.g I 0.837
Bra008153 Brassica rapa Bra008153 I 0.816
PRUPE_ppa023107mg Prunus persica PRUPE_ppa023107mg I 0.816
Cla019404 Citrullus lanatus Cla019404 I 0.816
Pm024905 Prunus mume Pm024905 I 0.816
cassava35166.m1 Manihot esculenta cassava35166.m1 I 0.816
Cagra.0402s0077 Capsella grandiflora Cagra.0402s0077 I 0.816
Carubv10021541m.g Capsella rubella Carubv10021541m.g I 0.816
Bra015907 Brassica rapa Bra015907 I 0.796
MTR_3g435550 Medicago truncatula MTR_3g435550 I 0.796
Solyc03g116010.1 Solanum lycopersicum Solyc03g116010.1 I 0.796
TCM_014009 Theobroma cacao TCM_014009 I 0.796
Ca_13151 Cicer arietinum Ca_13151 I 0.796
30138.m004071 Ricinus communis 30138.m004071 I 0.796
mg020279m Mimulus guttatus mg020279m I 0.796
Bostr.3288s0094 Boechera stricta Bostr.3288s0094 I 0.796
evm.TU.supercontig_423.7 Carica papaya evm.TU.supercontig_423.7 I 0.796
gene26015-v1.0-hybrid Fragaria vesca gene26015-v1.0-hybrid I 0.796
Gorai.006G266900 Gossypium raimondii Gorai.006G266900 I 0.796
Gorai.008G193400 Gossypium raimondii Gorai.008G193400 I 0.796
MDP0000261199 Malus domestica MDP0000261199 I 0.796
MDP0000266172 Malus domestica MDP0000266172 I 0.796
GLYMA17G10866 Glycine max GLYMA17G10866 I 0.776
VIT_17s0000g06250 Vitis vinifera VIT_17s0000g06250 I 0.776
mgf022310m Mimulus guttatus mgf022310m I 0.776
Bostr.0568s0123 Boechera stricta Bostr.0568s0123 N 0.776
chr4.CM0087.990.nc Lotus japonicus chr4.CM0087.990.nc I 0.776
fgenesh1_pg.C_scaffold_2000886 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000886 I 0.755
fgenesh1_pg.C_scaffold_8002648 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002648 I 0.755
GLYMA04G33516 Glycine max GLYMA04G33516 I 0.755
GLYMA05G01030 Glycine max GLYMA05G01030 I 0.755
GLYMA06G20881 Glycine max GLYMA06G20881 I 0.755
scaffold_103100001.1 Arabidopsis lyrata scaffold_103100001.1 I 0.755
Ca_27191 Cicer arietinum Ca_27191 I 0.755
Cucsa.197700 Cucumis sativus Cucsa.197700 I 0.755
orange1.1g036926m.g Citrus sinensis orange1.1g036926m.g I 0.755
Thhalv10009845m.g Eutrema salsugineum Thhalv10009845m.g N 0.755
PDK_20s1383532g001 Phoenix dactylifera PDK_20s1383532g001 I 0.755
RKD3 Arabidopsis thaliana AT5G66990 N 0.735
Bo7g064180 Brassica oleracea Bo7g064180 I 0.735
Bra012122 Brassica rapa Bra012122 I 0.735
GRMZM2G392306 Zea mays GRMZM2G392306 I 0.735
MLOC_59560 Hordeum vulgare MLOC_59560 I 0.735
Sb10g008120 Sorghum bicolor Sb10g008120 I 0.735
Si008273m.g Setaria italica Si008273m.g I 0.735
TRIUR3_19503 Triticum urartu TRIUR3_19503 I 0.735
Cagra.2007s0003 Capsella grandiflora Cagra.2007s0003 N 0.735
Carubv10027579m.g Capsella rubella Carubv10027579m.g N 0.735
Pavir.Da01160 Panicum virgatum Pavir.Da01160 I 0.735
Pavir.J13146 Panicum virgatum Pavir.J13146 I 0.735
Thhalv10005560m.g Eutrema salsugineum Thhalv10005560m.g N 0.735
MLOC_12609 Hordeum vulgare MLOC_12609 I 0.730
BGIOSGA005630 Oryza indica BGIOSGA005630 I 0.714
BGIOSGA022580 Oryza indica BGIOSGA022580 I 0.714
OB02G39310 Oryza brachyantha OB02G39310 I 0.714
OB06G17750 Oryza brachyantha OB06G17750 I 0.714
OBART02G32320 Oryza barthii OBART02G32320 I 0.714
OGLUM02G32960 Oryza glumaepatula OGLUM02G32960 I 0.714
OMERI02G30990 Oryza meridionalis OMERI02G30990 I 0.714
OMERI06G09770 Oryza meridionalis OMERI06G09770 I 0.714
ONIVA06G04700 Oryza nivara ONIVA06G04700 I 0.714
ONIVA06G09450 Oryza nivara ONIVA06G09450 I 0.714
OPUNC06G07940 Oryza punctata OPUNC06G07940 I 0.714
ORGLA02G0278600 Oryza glaberrima ORGLA02G0278600 I 0.714
ORGLA06G0077700 Oryza glaberrima ORGLA06G0077700 I 0.714
ORUFI02G34010 Oryza rufipogon ORUFI02G34010 I 0.714
ORUFI06G08510 Oryza rufipogon ORUFI06G08510 I 0.714
OS06G0228950 Oryza sativa OS06G0228950 I 0.714
Traes_6BL_301505440 Triticum aestivum Traes_6BL_301505440 I 0.714
Lus10019100.g Linum usitatissimum Lus10019100.g I 0.714
Lus10034456.g Linum usitatissimum Lus10034456.g I 0.714
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.703