Bo00703s130 (Brassica oleracea)
S1FA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04689 (S1FA) IPR006779 Bo00703s130 T321346_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
S1FA3
M07252_2.00 		Arabidopsis thaliana
RGAASNTTCTAGAAN
NTTCTAGAANSTTCY		 Dap-seq
OMalley et al.(2016)
AT3G09735_col_a 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo00703s130.1 S1FA 713 778

Links

Other S1FA family TFs
Other Brassica oleracea TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo00703s150 Brassica oleracea Bo00703s150 I 1.000
Bra039779 Brassica rapa Bra039779 I 0.970
Bo6g067310 Brassica oleracea Bo6g067310 I 0.894
Bra003132 Brassica rapa Bra003132 I 0.894
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.894
S1FA1 Arabidopsis thaliana AT3G53370 I 0.879
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.879
Bra006994 Brassica rapa Bra006994 I 0.864
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.848
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.833
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.833
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.833
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.818
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.818
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.818
S1FA2 Arabidopsis thaliana AT2G37120 I 0.803
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.803
Bra029784 Brassica rapa Bra029784 I 0.773
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.773
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.773
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.773
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.773
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.773
Bo3g061880 Brassica oleracea Bo3g061880 I 0.758
Bo5g138130 Brassica oleracea Bo5g138130 I 0.758
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.758
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.758
mgf004062m Mimulus guttatus mgf004062m I 0.758
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.758
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.758
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.750
S1FA3 Arabidopsis thaliana AT3G09735 D 0.742
Bo1g144300 Brassica oleracea Bo1g144300 I 0.742
Bra034084 Brassica rapa Bra034084 I 0.742
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.742
Cla018556 Citrullus lanatus Cla018556 I 0.742
Pm002519 Prunus mume Pm002519 N 0.742
mgf000337m Mimulus guttatus mgf000337m I 0.742
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.742
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.742
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.742
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.727
Cla018106 Citrullus lanatus Cla018106 I 0.727
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.727
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.727
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.727
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.727
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.714
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.712
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.712
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.712
Si011030m.g Setaria italica Si011030m.g N 0.712
TCM_022113 Theobroma cacao TCM_022113 I 0.712
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.712
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.712
29805.m001471 Ricinus communis 29805.m001471 I 0.712
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.712
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.712
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.712