gmeb1 (Danio rerio)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSDARG00000062060 T321664_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.965 0.811
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.965 0.811
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.965 0.811
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.965 0.811
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.965 0.811
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.965 0.811
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.965 0.797
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.960 0.770
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.960 0.757
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.947 0.716
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.942 0.689
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.942 0.689
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.942 0.689
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.942 0.689
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.942 0.689
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.942 0.689
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.942 0.689
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.940 0.689
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.884 0.595
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000122476 SAND 70 144
ENSDARP00000125781 SAND 70 144

Links

Other SAND family TFs
Other Danio rerio TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000015681 Astyanax mexicanus ENSAMXG00000015681 I 0.993
ENSGMOG00000014002 Gadus morhua ENSGMOG00000014002 I 0.988
ENSAMXG00000001956 Astyanax mexicanus ENSAMXG00000001956 I 0.987
ENSPFOG00000002327 Poecilia formosa ENSPFOG00000002327 I 0.986
ENSTNIG00000009672 Tetraodon nigroviridis ENSTNIG00000009672 I 0.986
ENSTRUG00000014439 Takifugu rubripes ENSTRUG00000014439 I 0.986
gmeb1 Oryzias latipes ENSORLG00000008294 I 0.983
gmeb1 Tetraodon nigroviridis ENSTNIG00000003832 I 0.982
ENSLOCG00000003512 Lepisosteus oculatus ENSLOCG00000003512 I 0.981
ENSONIG00000007575 Oreochromis niloticus ENSONIG00000007575 I 0.978
ENSPFOG00000004759 Poecilia formosa ENSPFOG00000004759 I 0.978
GMEB1 Takifugu rubripes ENSTRUG00000011964 I 0.978
ENSXMAG00000012875 Xiphophorus maculatus ENSXMAG00000012875 I 0.978
ENSGMOG00000013494 Gadus morhua ENSGMOG00000013494 I 0.974
gmeb1 Gasterosteus aculeatus ENSGACG00000007791 I 0.972
ENSTNIG00000008152 Tetraodon nigroviridis ENSTNIG00000008152 I 0.967
ENSORLG00000020761 Oryzias latipes ENSORLG00000020761 I 0.966
ENSPSIG00000016715 Pelodiscus sinensis ENSPSIG00000016715 I 0.966
Aan_R005833 Calypte anna Aan_R005833 I 0.966
ENSAMEG00000011405 Ailuropoda melanoleuca ENSAMEG00000011405 I 0.965
ENSAPLG00000002955 Anas platyrhynchos ENSAPLG00000002955 I 0.965
GMEB1 Bos taurus ENSBTAG00000001160 I 0.965
GMEB1 Canis familiaris ENSCAFG00000011711 I 0.965
GMEB1 Callithrix jacchus ENSCJAG00000009754 I 0.965
ENSCPOG00000013402 Cavia porcellus ENSCPOG00000013402 I 0.965
ENSCSAG00000001017 Chlorocebus sabaeus ENSCSAG00000001017 I 0.965
GMEB1 Dasypus novemcinctus ENSDNOG00000025258 I 0.965
GMEB1 Equus caballus ENSECAG00000009764 I 0.965
ENSFALG00000001378 Ficedula albicollis ENSFALG00000001378 I 0.965
GMEB1 Felis catus ENSFCAG00000018209 I 0.965
GMEB1 Homo sapiens ENSG00000162419 D 0.965
ENSGALG00000000981 Gallus gallus ENSGALG00000000981 I 0.965
GMEB1 Gorilla gorilla ENSGGOG00000009221 I 0.965
GMEB1 Loxodonta africana ENSLAFG00000011849 I 0.965
ENSMEUG00000004906 Macropus eugenii ENSMEUG00000004906 I 0.965
GMEB1 Meleagris gallopavo ENSMGAG00000001716 D 0.965
GMEB1 Myotis lucifugus ENSMLUG00000012602 I 0.965
ENSMODG00000010947 Monodelphis domestica ENSMODG00000010947 D 0.965
ENSMPUG00000015503 Mustela putorius furo ENSMPUG00000015503 I 0.965
Gmeb1 Mus musculus ENSMUSG00000028901 D 0.965
ENSNLEG00000009837 Nomascus leucogenys ENSNLEG00000009837 I 0.965
GMEB1 Ornithorhynchus anatinus ENSOANG00000006127 I 0.965
ENSOARG00000002809 Ovis aries ENSOARG00000002809 I 0.965
GMEB1 Oryctolagus cuniculus ENSOCUG00000010893 I 0.965
ENSPANG00000018743 Papio anubis ENSPANG00000018743 I 0.965
ENSPPYG00000001635 Pongo abelii ENSPPYG00000001635 I 0.965
GMEB1 Pan troglodytes ENSPTRG00000000438 I 0.965
GMEB1 Pteropus vampyrus ENSPVAG00000017223 D 0.965
Gmeb1 Rattus norvegicus ENSRNOG00000010910 I 0.965
GMEB1 Sorex araneus ENSSARG00000001145 I 0.965
ENSSHAG00000009099 Sarcophilus harrisii ENSSHAG00000009099 I 0.965
GMEB1 Taeniopygia guttata ENSTGUG00000000731 I 0.965
GMEB1 Tursiops truncatus ENSTTRG00000013602 I 0.965
GMEB1 Vicugna pacos ENSVPAG00000006781 I 0.965
Afo_R008896 Aptenodytes forsteri Afo_R008896 I 0.965
Brh_R012802 Buceros rhinoceros Brh_R012802 I 0.965
Cmyd_10009780 Chelonia mydas Cmyd_10009780 I 0.965
ENSP00000294409-D1 Bos grunniens ENSP00000294409-D1 I 0.965
ENSP00000381890 Macaca fascicularis ENSP00000381890 I 0.965
Gfo_R008934 Geospiza fortis Gfo_R008934 I 0.965
Myotis_brandtii_GMEB1_10029602 Myotis brandtii Myotis_brandtii_GMEB1_10029602 I 0.965
Ogr01986 Ophisaurus gracilis Ogr01986 I 0.965
Pvit_15570 Pogona vitticeps Pvit_15570 I 0.965
ENSACAG00000010878 Anolis carolinensis ENSACAG00000010878 I 0.964
Alligator_sinensis_CCG020726.1 Alligator sinensis Alligator_sinensis_CCG020726.1 I 0.963
ENSLACG00000011757 Latimeria chalumnae ENSLACG00000011757 I 0.962
gmeb1 Xenopus tropicalis XB-GENE-1002169 D 0.960
gmeb1.S Xenopus laevis XB-GENE-1002174 D 0.960
ENSLACG00000007355 Latimeria chalumnae ENSLACG00000007355 I 0.959
AAH84751 Xenopus laevis AAH84751 I 0.955
ENSPSIG00000013495 Pelodiscus sinensis ENSPSIG00000013495 I 0.951
Cmyd_10009585 Chelonia mydas Cmyd_10009585 I 0.951
gmeb2.S Xenopus laevis XB-GENE-5755500 I 0.950
ENSLOCG00000001741 Lepisosteus oculatus ENSLOCG00000001741 I 0.948
GMEB2 Anolis carolinensis ENSACAG00000011613 D 0.947
ENSAPLG00000010816 Anas platyrhynchos ENSAPLG00000010816 I 0.947
ENSFALG00000005856 Ficedula albicollis ENSFALG00000005856 I 0.947
GMEB2 Taeniopygia guttata ENSTGUG00000006996 I 0.947
Aan_R015716 Calypte anna Aan_R015716 I 0.947
Brh_R002176 Buceros rhinoceros Brh_R002176 I 0.947
Gfo_R005287 Geospiza fortis Gfo_R005287 I 0.947
Pvit_01323 Pogona vitticeps Pvit_01323 I 0.947
Tal_R007596 Tyto alba Tal_R007596 I 0.947
GMEB2 Monodelphis domestica ENSMODG00000016974 I 0.946
ENSSHAG00000018066 Sarcophilus harrisii ENSSHAG00000018066 I 0.946
ENSAMEG00000001647 Ailuropoda melanoleuca ENSAMEG00000001647 I 0.942
GMEB2 Bos taurus ENSBTAG00000014769 I 0.942
GMEB2 Canis familiaris ENSCAFG00000013008 I 0.942
GMEB2 Callithrix jacchus ENSCJAG00000010283 I 0.942
GMEB2 Cavia porcellus ENSCPOG00000025567 I 0.942
ENSCSAG00000016428 Chlorocebus sabaeus ENSCSAG00000016428 I 0.942
GMEB2 Dasypus novemcinctus ENSDNOG00000041843 I 0.942
GMEB2 Equus caballus ENSECAG00000019377 I 0.942
GMEB2 Felis catus ENSFCAG00000031273 I 0.942
GMEB2 Homo sapiens ENSG00000101216 D 0.942
ENSGALG00000027470 Gallus gallus ENSGALG00000027470 I 0.942
GMEB2 Gorilla gorilla ENSGGOG00000008653 I 0.942
GMEB2 Loxodonta africana ENSLAFG00000012335 I 0.942
GMEB2 Myotis lucifugus ENSMLUG00000014606 I 0.942
ENSMMUG00000006168 Macaca mulatta ENSMMUG00000006168 I 0.942
ENSMPUG00000008374 Mustela putorius furo ENSMPUG00000008374 I 0.942
Gmeb2 Mus musculus ENSMUSG00000038705 D 0.942
ENSNLEG00000010094 Nomascus leucogenys ENSNLEG00000010094 I 0.942
ENSOARG00000010596 Ovis aries ENSOARG00000010596 I 0.942
GMEB2 Oryctolagus cuniculus ENSOCUG00000025815 I 0.942
GMEB2 Otolemur garnettii ENSOGAG00000008826 I 0.942
ENSPANG00000024129 Papio anubis ENSPANG00000024129 I 0.942
ENSPPYG00000011242 Pongo abelii ENSPPYG00000011242 I 0.942
GMEB2 Pan troglodytes ENSPTRG00000013744 I 0.942
GMEB2 Pteropus vampyrus ENSPVAG00000013473 I 0.942
Gmeb2 Rattus norvegicus ENSRNOG00000013339 I 0.942
ENSSTOG00000023031 Ictidomys tridecemlineatus ENSSTOG00000023031 I 0.942
Afo_R010444 Aptenodytes forsteri Afo_R010444 I 0.942
ENSP00000266068-D1 Bos grunniens ENSP00000266068-D1 I 0.942
Myotis_brandtii_GMEB2_10023457 Myotis brandtii Myotis_brandtii_GMEB2_10023457 I 0.942
GMEB2 Meleagris gallopavo ENSMGAG00000006922 D 0.940
GMEB2 Ornithorhynchus anatinus ENSOANG00000004939 I 0.939
Alligator_sinensis_CCG018614.2 Alligator sinensis Alligator_sinensis_CCG018614.2 I 0.934
ENSPFOG00000017553 Poecilia formosa ENSPFOG00000017553 I 0.928
ENSXMAG00000012852 Xiphophorus maculatus ENSXMAG00000012852 I 0.928
GMEB2 Danio rerio ENSDARG00000093240 I 0.926
ENSAMXG00000001001 Astyanax mexicanus ENSAMXG00000001001 I 0.921
ENSONIG00000017972 Oreochromis niloticus ENSONIG00000017972 I 0.921
si:ch73-302a13.2 Tetraodon nigroviridis ENSTNIG00000002528 I 0.912
ENSTSYG00000002782 Tarsius syrichta ENSTSYG00000002782 I 0.903
Ogr06841 Ophisaurus gracilis Ogr06841 I 0.899
GMEB1 Echinops telfairi ENSETEG00000000775 I 0.898
si:ch73-302a13.2 Gasterosteus aculeatus ENSGACG00000003620 I 0.895
si:ch73-302a13.2 Takifugu rubripes ENSTRUG00000012194 I 0.890
gmeb2 Xenopus tropicalis XB-GENE-5755487 I 0.889
ENSGMOG00000000899 Gadus morhua ENSGMOG00000000899 I 0.885
GMEB2 Procavia capensis ENSPCAG00000000522 I 0.885
ENSCING00000003435 Ciona intestinalis ENSCING00000003435 D 0.884
ENSCSAVG00000000320 Ciona savignyi ENSCSAVG00000000320 I 0.884
ENSMEUG00000008516 Macropus eugenii ENSMEUG00000008516 I 0.872
GMEB2 Erinaceus europaeus ENSEEUG00000001478 I 0.863
GMEB2 Microcebus murinus ENSMICG00000010614 I 0.863
ENSMMUP00000008108 Macaca fascicularis ENSMMUP00000008108 I 0.863