gmeb1 (Tetraodon nigroviridis)
SAND

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01342 (SAND) IPR000770 ENSTNIG00000003832 T321929_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GMEB1
M02460_2.00 		Homo sapiens
NNVCGYNNN
NNNRCGBNN		 PBM
Weirauch et al.(2014)
pTH9026 		0.963 0.787
Gmeb1
M00190_2.00 		Mus musculus
NNRCGYNNN
NNNRCGYNN		 PBM
Badis et al.(2009)
Gmeb1_1745 		0.963 0.787
GMEB1
M02465_2.00 		Pteropus vampyrus
NBACGYHN
NDRCGTVN		 PBM
Weirauch et al.(2014)
pTH9282 		0.963 0.787
GMEB1
M05737_2.00 		Homo sapiens
KKACGTAMNKTACGTAM
KTACGTAMNKTACGTMM		 SELEX
Yin et al.(2017)
GMEB1_FL_HT-SELEX 		0.963 0.787
GMEB1
M05738_2.00 		Homo sapiens
KNRCGTVRBBVCGYHN
NDRCGBVVYBACGYNM		 SELEX
Yin et al.(2017)
GMEB1_FL_Methyl-HT-SELEX 		0.963 0.787
GMEB1
M02461_2.00 		Meleagris gallopavo
NNACGYNNN
NNNRCGTNN		 PBM
Weirauch et al.(2014)
pTH8318 		0.963 0.773
ENSMODG00000010947
M02463_2.00 		Monodelphis domestica
NNRCGYN
NRCGYNN		 PBM
Weirauch et al.(2014)
pTH8671 		0.963 0.773
gmeb1.S
M02469_2.00 		Xenopus laevis
NKACGTVY
RBACGTMN		 PBM
Weirauch et al.(2014)
pTH9298 		0.958 0.773
gmeb1
M02468_2.00 		Xenopus tropicalis
NNRCGYNNN
NNNRCGYNN		 PBM
Weirauch et al.(2014)
pTH8745 		0.958 0.760
GMEB2
M02458_2.00 		Anolis carolinensis
NNACGYANN
NNTRCGTNN		 PBM
Weirauch et al.(2014)
pTH9219 		0.944 0.720
Gmeb2
M00824_2.00 		Mus musculus
NNACGYNN
NNRCGTNN		 PBM
Weirauch et al.(2013)
pTH3084 		0.939 0.693
GMEB2
M03471_2.00 		Homo sapiens
YBACGYAM
KTRCGTVR		 SELEX
Jolma et al.(2013)
GMEB2_1 		0.939 0.693
GMEB2
M03472_2.00 		Homo sapiens
WACGTGSTYACGYW
WRCGTRASCACGTW		 SELEX
Jolma et al.(2013)
GMEB2_2 		0.939 0.693
GMEB2
M03473_2.00 		Homo sapiens
YACGTAACBBACGYA
TRCGTVVGTTACGTR		 SELEX
Jolma et al.(2013)
GMEB2_3 		0.939 0.693
GMEB2
M03474_2.00 		Homo sapiens
BKACGTAM
KTACGTMV		 SELEX
Jolma et al.(2013)
GMEB2_4 		0.939 0.693
GMEB2
M05735_2.00 		Homo sapiens
BYACGTAVSBTACGTRV
BYACGTAVSBTACGTRV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_HT-SELEX 		0.939 0.693
GMEB2
M05736_2.00 		Homo sapiens
BBACGYAMVBNACGYVV
BBRCGTNVBKTRCGTVV		 SELEX
Yin et al.(2017)
GMEB2_eDBD_Methyl-HT-SELEX 		0.939 0.693
GMEB2
M02462_2.00 		Meleagris gallopavo
BBACGYH
DRCGTVV		 PBM
Weirauch et al.(2014)
pTH9211 		0.937 0.693
ENSCING00000003435
M02459_2.00 		Ciona intestinalis
NKACGTMVNN
NNBKACGTMN		 PBM
Weirauch et al.(2014)
pTH9356 		0.880 0.587
For this family, TFs with SR scores > 0.843 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000006433 SAND 77 152

Links

Other SAND family TFs
Other Tetraodon nigroviridis TFs

138 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GMEB1 Takifugu rubripes ENSTRUG00000011964 I 0.993
ENSONIG00000007575 Oreochromis niloticus ENSONIG00000007575 I 0.990
ENSPFOG00000004759 Poecilia formosa ENSPFOG00000004759 I 0.990
ENSXMAG00000012875 Xiphophorus maculatus ENSXMAG00000012875 I 0.990
gmeb1 Oryzias latipes ENSORLG00000008294 I 0.989
gmeb1 Gasterosteus aculeatus ENSGACG00000007791 I 0.988
ENSAMXG00000015681 Astyanax mexicanus ENSAMXG00000015681 I 0.985
gmeb1 Danio rerio ENSDARG00000062060 I 0.982
ENSGMOG00000014002 Gadus morhua ENSGMOG00000014002 I 0.982
ENSLOCG00000003512 Lepisosteus oculatus ENSLOCG00000003512 I 0.976
ENSAMXG00000001956 Astyanax mexicanus ENSAMXG00000001956 I 0.968
ENSPFOG00000002327 Poecilia formosa ENSPFOG00000002327 I 0.966
ENSTRUG00000014439 Takifugu rubripes ENSTRUG00000014439 I 0.966
ENSTNIG00000009672 Tetraodon nigroviridis ENSTNIG00000009672 I 0.965
ENSPSIG00000016715 Pelodiscus sinensis ENSPSIG00000016715 I 0.964
Aan_R005833 Calypte anna Aan_R005833 I 0.964
ENSAMEG00000011405 Ailuropoda melanoleuca ENSAMEG00000011405 I 0.963
ENSAPLG00000002955 Anas platyrhynchos ENSAPLG00000002955 I 0.963
GMEB1 Bos taurus ENSBTAG00000001160 I 0.963
GMEB1 Canis familiaris ENSCAFG00000011711 I 0.963
GMEB1 Callithrix jacchus ENSCJAG00000009754 I 0.963
ENSCPOG00000013402 Cavia porcellus ENSCPOG00000013402 I 0.963
ENSCSAG00000001017 Chlorocebus sabaeus ENSCSAG00000001017 I 0.963
GMEB1 Dasypus novemcinctus ENSDNOG00000025258 I 0.963
GMEB1 Equus caballus ENSECAG00000009764 I 0.963
ENSFALG00000001378 Ficedula albicollis ENSFALG00000001378 I 0.963
GMEB1 Felis catus ENSFCAG00000018209 I 0.963
GMEB1 Homo sapiens ENSG00000162419 D 0.963
ENSGALG00000000981 Gallus gallus ENSGALG00000000981 I 0.963
GMEB1 Gorilla gorilla ENSGGOG00000009221 I 0.963
GMEB1 Loxodonta africana ENSLAFG00000011849 I 0.963
ENSMEUG00000004906 Macropus eugenii ENSMEUG00000004906 I 0.963
GMEB1 Meleagris gallopavo ENSMGAG00000001716 D 0.963
GMEB1 Myotis lucifugus ENSMLUG00000012602 I 0.963
ENSMODG00000010947 Monodelphis domestica ENSMODG00000010947 D 0.963
ENSMPUG00000015503 Mustela putorius furo ENSMPUG00000015503 I 0.963
Gmeb1 Mus musculus ENSMUSG00000028901 D 0.963
ENSNLEG00000009837 Nomascus leucogenys ENSNLEG00000009837 I 0.963
GMEB1 Ornithorhynchus anatinus ENSOANG00000006127 I 0.963
ENSOARG00000002809 Ovis aries ENSOARG00000002809 I 0.963
GMEB1 Oryctolagus cuniculus ENSOCUG00000010893 I 0.963
ENSPANG00000018743 Papio anubis ENSPANG00000018743 I 0.963
ENSPPYG00000001635 Pongo abelii ENSPPYG00000001635 I 0.963
GMEB1 Pan troglodytes ENSPTRG00000000438 I 0.963
GMEB1 Pteropus vampyrus ENSPVAG00000017223 D 0.963
Gmeb1 Rattus norvegicus ENSRNOG00000010910 I 0.963
GMEB1 Sorex araneus ENSSARG00000001145 I 0.963
ENSSHAG00000009099 Sarcophilus harrisii ENSSHAG00000009099 I 0.963
GMEB1 Taeniopygia guttata ENSTGUG00000000731 I 0.963
GMEB1 Tursiops truncatus ENSTTRG00000013602 I 0.963
GMEB1 Vicugna pacos ENSVPAG00000006781 I 0.963
Afo_R008896 Aptenodytes forsteri Afo_R008896 I 0.963
Brh_R012802 Buceros rhinoceros Brh_R012802 I 0.963
Cmyd_10009780 Chelonia mydas Cmyd_10009780 I 0.963
ENSP00000294409-D1 Bos grunniens ENSP00000294409-D1 I 0.963
ENSP00000381890 Macaca fascicularis ENSP00000381890 I 0.963
Gfo_R008934 Geospiza fortis Gfo_R008934 I 0.963
Myotis_brandtii_GMEB1_10029602 Myotis brandtii Myotis_brandtii_GMEB1_10029602 I 0.963
Ogr01986 Ophisaurus gracilis Ogr01986 I 0.963
Pvit_15570 Pogona vitticeps Pvit_15570 I 0.963
ENSACAG00000010878 Anolis carolinensis ENSACAG00000010878 I 0.962
Alligator_sinensis_CCG020726.1 Alligator sinensis Alligator_sinensis_CCG020726.1 I 0.962
ENSLACG00000011757 Latimeria chalumnae ENSLACG00000011757 I 0.960
gmeb1 Xenopus tropicalis XB-GENE-1002169 D 0.958
gmeb1.S Xenopus laevis XB-GENE-1002174 D 0.958
ENSLACG00000007355 Latimeria chalumnae ENSLACG00000007355 I 0.957
AAH84751 Xenopus laevis AAH84751 I 0.954
ENSPSIG00000013495 Pelodiscus sinensis ENSPSIG00000013495 I 0.949
Cmyd_10009585 Chelonia mydas Cmyd_10009585 I 0.949
gmeb2.S Xenopus laevis XB-GENE-5755500 I 0.948
ENSLOCG00000001741 Lepisosteus oculatus ENSLOCG00000001741 I 0.946
ENSAPLG00000010816 Anas platyrhynchos ENSAPLG00000010816 I 0.945
ENSFALG00000005856 Ficedula albicollis ENSFALG00000005856 I 0.945
GMEB2 Taeniopygia guttata ENSTGUG00000006996 I 0.945
Aan_R015716 Calypte anna Aan_R015716 I 0.945
Brh_R002176 Buceros rhinoceros Brh_R002176 I 0.945
Gfo_R005287 Geospiza fortis Gfo_R005287 I 0.945
Tal_R007596 Tyto alba Tal_R007596 I 0.945
GMEB2 Anolis carolinensis ENSACAG00000011613 D 0.944
Pvit_01323 Pogona vitticeps Pvit_01323 I 0.944
GMEB2 Monodelphis domestica ENSMODG00000016974 I 0.943
ENSSHAG00000018066 Sarcophilus harrisii ENSSHAG00000018066 I 0.943
ENSGALG00000027470 Gallus gallus ENSGALG00000027470 I 0.940
Afo_R010444 Aptenodytes forsteri Afo_R010444 I 0.940
ENSAMEG00000001647 Ailuropoda melanoleuca ENSAMEG00000001647 I 0.939
GMEB2 Bos taurus ENSBTAG00000014769 I 0.939
GMEB2 Canis familiaris ENSCAFG00000013008 I 0.939
GMEB2 Callithrix jacchus ENSCJAG00000010283 I 0.939
GMEB2 Cavia porcellus ENSCPOG00000025567 I 0.939
ENSCSAG00000016428 Chlorocebus sabaeus ENSCSAG00000016428 I 0.939
GMEB2 Dasypus novemcinctus ENSDNOG00000041843 I 0.939
GMEB2 Equus caballus ENSECAG00000019377 I 0.939
GMEB2 Felis catus ENSFCAG00000031273 I 0.939
GMEB2 Homo sapiens ENSG00000101216 D 0.939
GMEB2 Gorilla gorilla ENSGGOG00000008653 I 0.939
GMEB2 Myotis lucifugus ENSMLUG00000014606 I 0.939
ENSMMUG00000006168 Macaca mulatta ENSMMUG00000006168 I 0.939
ENSMPUG00000008374 Mustela putorius furo ENSMPUG00000008374 I 0.939
Gmeb2 Mus musculus ENSMUSG00000038705 D 0.939
ENSNLEG00000010094 Nomascus leucogenys ENSNLEG00000010094 I 0.939
ENSOARG00000010596 Ovis aries ENSOARG00000010596 I 0.939
GMEB2 Oryctolagus cuniculus ENSOCUG00000025815 I 0.939
GMEB2 Otolemur garnettii ENSOGAG00000008826 I 0.939
ENSPANG00000024129 Papio anubis ENSPANG00000024129 I 0.939
ENSPPYG00000011242 Pongo abelii ENSPPYG00000011242 I 0.939
GMEB2 Pan troglodytes ENSPTRG00000013744 I 0.939
GMEB2 Pteropus vampyrus ENSPVAG00000013473 I 0.939
Gmeb2 Rattus norvegicus ENSRNOG00000013339 I 0.939
ENSSTOG00000023031 Ictidomys tridecemlineatus ENSSTOG00000023031 I 0.939
ENSP00000266068-D1 Bos grunniens ENSP00000266068-D1 I 0.939
Myotis_brandtii_GMEB2_10023457 Myotis brandtii Myotis_brandtii_GMEB2_10023457 I 0.939
ENSORLG00000020761 Oryzias latipes ENSORLG00000020761 I 0.938
GMEB2 Meleagris gallopavo ENSMGAG00000006922 D 0.937
ENSGMOG00000013494 Gadus morhua ENSGMOG00000013494 I 0.936
GMEB2 Ornithorhynchus anatinus ENSOANG00000004939 I 0.936
Alligator_sinensis_CCG018614.2 Alligator sinensis Alligator_sinensis_CCG018614.2 I 0.932
GMEB2 Loxodonta africana ENSLAFG00000012335 I 0.928
ENSPFOG00000017553 Poecilia formosa ENSPFOG00000017553 I 0.926
ENSXMAG00000012852 Xiphophorus maculatus ENSXMAG00000012852 I 0.926
GMEB2 Danio rerio ENSDARG00000093240 I 0.923
ENSTNIG00000008152 Tetraodon nigroviridis ENSTNIG00000008152 I 0.920
ENSONIG00000017972 Oreochromis niloticus ENSONIG00000017972 I 0.918
ENSAMXG00000001001 Astyanax mexicanus ENSAMXG00000001001 I 0.917
si:ch73-302a13.2 Tetraodon nigroviridis ENSTNIG00000002528 I 0.909
ENSGMOG00000000899 Gadus morhua ENSGMOG00000000899 I 0.899
ENSTSYG00000002782 Tarsius syrichta ENSTSYG00000002782 I 0.899
Ogr06841 Ophisaurus gracilis Ogr06841 I 0.895
GMEB1 Echinops telfairi ENSETEG00000000775 I 0.893
si:ch73-302a13.2 Gasterosteus aculeatus ENSGACG00000003620 I 0.891
si:ch73-302a13.2 Takifugu rubripes ENSTRUG00000012194 I 0.886
gmeb2 Xenopus tropicalis XB-GENE-5755487 I 0.884
ENSCING00000003435 Ciona intestinalis ENSCING00000003435 D 0.880
ENSCSAVG00000000320 Ciona savignyi ENSCSAVG00000000320 I 0.880
ENSMEUG00000008516 Macropus eugenii ENSMEUG00000008516 I 0.867
GMEB2 Procavia capensis ENSPCAG00000000522 I 0.859
GMEB2 Erinaceus europaeus ENSEEUG00000001478 I 0.857
GMEB2 Microcebus murinus ENSMICG00000010614 I 0.857
ENSMMUP00000008108 Macaca fascicularis ENSMMUP00000008108 I 0.857