CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh4_pg.C_scaffold_42000124
(
Volvox carteri
)
SAND
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01342 (SAND)
IPR000770
fgenesh4_pg.C_scaffold_42000124
T322211_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh4_pg.C_scaffold_42000124
SAND
186
254
VAGIVRGTFHPDLYMCSQDCITFKGKRIGRSKFEKLGNSSMAKWHRSIRVIREDGELEPLGEWLTRHGL
Links
Other
SAND
family TFs
Other
Volvox carteri
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh4_pg.C_scaffold_23000175
Volvox carteri
fgenesh4_pg.C_scaffold_23000175
N
0.873
estExt_Genewise1Plus.C_230144
Volvox carteri
estExt_Genewise1Plus.C_230144
N
0.858
estExt_Genewise1Plus.C_230145
Volvox carteri
estExt_Genewise1Plus.C_230145
N
0.854
fgenesh4_pg.C_scaffold_23000177
Volvox carteri
fgenesh4_pg.C_scaffold_23000177
N
0.850