AMTR_s00019p00235390 (Amborella trichopoda)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 AMTR_s00019p00235390 T322376_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.935 0.800
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.915 0.693
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.915 0.693
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.915 0.693
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.906 0.760
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.905 0.707
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.902 0.773
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.895 0.747
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.888 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN07360 SBP 41 115

Links

Other SBP family TFs
Other Amborella trichopoda TFs

226 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.968
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.958
MDP0000158607 Malus domestica MDP0000158607 I 0.958
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.957
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.957
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.956
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.956
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.956
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.956
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.956
Ca_16243 Cicer arietinum Ca_16243 I 0.956
Pm017777 Prunus mume Pm017777 I 0.956
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.956
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.954
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.954
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.952
Pm011381 Prunus mume Pm011381 I 0.952
MDP0000156994 Malus domestica MDP0000156994 I 0.952
MDP0000861601 Malus domestica MDP0000861601 I 0.952
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.951
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.949
Cla023735 Citrullus lanatus Cla023735 I 0.949
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.948
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.944
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.944
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.944
SPL5 Oryza sativa OS02G0177300 I 0.944
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.941
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.940
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.939
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.939
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.939
Si017338m.g Setaria italica Si017338m.g I 0.939
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.939
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.939
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.937
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.937
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.937
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.937
TCM_005622 Theobroma cacao TCM_005622 I 0.937
Ca_18942 Cicer arietinum Ca_18942 I 0.937
30174.m008803 Ricinus communis 30174.m008803 I 0.937
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.937
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.937
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.937
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.937
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.937
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.937
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.937
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.937
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.937
PK25779.1 Cannabis sativa PK25779.1 I 0.937
MDP0000803116 Malus domestica MDP0000803116 I 0.936
SPL8 Arabidopsis thaliana AT1G02065 D 0.935
Bo5g001290 Brassica oleracea Bo5g001290 I 0.935
Bo8g118210 Brassica oleracea Bo8g118210 I 0.935
Bra032662 Brassica rapa Bra032662 I 0.935
Bra033221 Brassica rapa Bra033221 I 0.935
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.935
mgf016085m Mimulus guttatus mgf016085m I 0.935
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.935
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.935
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.935
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.935
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.935
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.934
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.934
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.934
Cla006776 Citrullus lanatus Cla006776 I 0.934
29983.m003158 Ricinus communis 29983.m003158 I 0.931
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.931
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.930
TCM_029832 Theobroma cacao TCM_029832 I 0.930
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.930
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.929
OB02G15090 Oryza brachyantha OB02G15090 I 0.929
mgf016414m Mimulus guttatus mgf016414m I 0.928
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.928
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.927
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.926
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.926
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.926
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.926
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.926
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.926
SPL10 Oryza indica BGIOSGA023408 I 0.925
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.925
MLOC_326 Hordeum vulgare MLOC_326 I 0.925
OB06G31100 Oryza brachyantha OB06G31100 I 0.925
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.925
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.925
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.925
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.925
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.925
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.925
SPL10 Oryza sativa OS06G0659100 I 0.925
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.925
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.925
Si006559m.g Setaria italica Si006559m.g I 0.925
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.925
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.925
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.925
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.925
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.924
Bo4g042390 Brassica oleracea Bo4g042390 I 0.923
Bra005470 Brassica rapa Bra005470 I 0.923
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.922
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.922
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.919
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.919
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.919
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.919
Bra022954 Brassica rapa Bra022954 I 0.918
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.918
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.918
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.918
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.917
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.917
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.917
SPL3 Arabidopsis thaliana AT2G33810 D 0.915
Cla009788 Citrullus lanatus Cla009788 I 0.915
Cla020006 Citrullus lanatus Cla020006 I 0.915
PK26639.1 Cannabis sativa PK26639.1 I 0.915
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.914
Bo3g027460 Brassica oleracea Bo3g027460 I 0.913
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.913
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.912
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.912
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.912
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.912
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.912
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.909
GLYMA12G35460 Glycine max GLYMA12G35460 I 0.909
GLYMA13G35000 Glycine max GLYMA13G35000 I 0.909
28211.m000132 Ricinus communis 28211.m000132 I 0.909
mgf017351m Mimulus guttatus mgf017351m I 0.909
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.908
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.907
TCM_031595 Theobroma cacao TCM_031595 I 0.907
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.907
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.906
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.906
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.905
PK22320.1 Cannabis sativa PK22320.1 D 0.905
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.903
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.902
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.901
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.901
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.900
OBART06G23500 Oryza barthii OBART06G23500 I 0.898
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.898
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.898
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.898
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.898
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.898
Ca_22526 Cicer arietinum Ca_22526 I 0.897
mgf002455m Mimulus guttatus mgf002455m I 0.897
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.896
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.896
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.896
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.896
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.896
OB04G34990 Oryza brachyantha OB04G34990 I 0.896
OBART04G27990 Oryza barthii OBART04G27990 I 0.896
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.896
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.896
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.896
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.896
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.896
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.896
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.896
SPL8 Oryza sativa OS04G0656500 I 0.896
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.896
Si022315m.g Setaria italica Si022315m.g I 0.896
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.896
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.896
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.896
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.896
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.895
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.895
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.894
mgf009459m Mimulus guttatus mgf009459m I 0.894
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.893
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.893
Si034095m.g Setaria italica Si034095m.g I 0.893
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.893
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.893
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.893
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.892
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.892
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.892
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.891
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.890
MTR_2g078770 Medicago truncatula MTR_2g078770 I 0.890
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.890
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.890
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.889
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.889
mgf001295m Mimulus guttatus mgf001295m I 0.889
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.888
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.888
Ca_03548 Cicer arietinum Ca_03548 I 0.888
30076.m004574 Ricinus communis 30076.m004574 I 0.888
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.888
mgf011616m Mimulus guttatus mgf011616m I 0.888
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.888
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.888
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.888
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.888
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.888
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.888
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.888
PK06791.1 Cannabis sativa PK06791.1 D 0.888
TCM_004922 Theobroma cacao TCM_004922 I 0.887
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I 0.887
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.886
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.886
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.886
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.886
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.886
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.886
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.886
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.886
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.886
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.886
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.886