Bo2g062840 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo2g062840 T322427_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh1_pg.C_1940033
M02479_2.00 		Physcomitrella patens
NNGTACGDH
DHCGTACNN		 PBM
Weirauch et al.(2014)
pTH8664 		0.902 0.760
SPL5
M02474_2.00 		Arabidopsis thaliana
NNGTACGDN
NHCGTACNN		 PBM
Weirauch et al.(2014)
pTH7385 		0.895 0.667
SPL5
M07261_2.00 		Arabidopsis thaliana
NDNYGTACGGAH
DTCCGTACRNHN		 Dap-seq
OMalley et al.(2016)
SPL5_col_a 		0.895 0.667
SPL5
M07262_2.00 		Arabidopsis thaliana
NBGTACGGWH
DWCCGTACVN		 Dap-seq
OMalley et al.(2016)
SPL5_colamp_a 		0.895 0.667
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g062840.1 SBP 89 163

Links

Other SBP family TFs
Other Brassica oleracea TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra038324 Brassica rapa Bra038324 I 0.984
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.982
Pm030597 Prunus mume Pm030597 I 0.982
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.981
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.980
MDP0000171877 Malus domestica MDP0000171877 I 0.979
MDP0000246046 Malus domestica MDP0000246046 I 0.979
SPL6 Arabidopsis thaliana AT1G69170 I 0.977
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.976
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.976
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.972
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.972
MDP0000119458 Malus domestica MDP0000119458 I 0.972
MDP0000193702 Malus domestica MDP0000193702 I 0.972
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.972
Ca_24655 Cicer arietinum Ca_24655 I 0.965
Bo6g108620 Brassica oleracea Bo6g108620 N 0.963
Bra004363 Brassica rapa Bra004363 N 0.963
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.961
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.961
F775_02791 Aegilops tauschii F775_02791 I 0.960
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.960
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.960
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.960
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.959
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.959
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.959
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.959
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.959
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.959
Si010262m.g Setaria italica Si010262m.g I 0.958
MDP0000589558 Malus domestica MDP0000589558 I 0.958
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.956
TCM_011483 Theobroma cacao TCM_011483 I 0.955
Pm025028 Prunus mume Pm025028 I 0.955
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.953
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.951
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.951
PK03565.1 Cannabis sativa PK03565.1 I 0.951
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.950
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.948
Cla021411 Citrullus lanatus Cla021411 I 0.947
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.946
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.946
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.946
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.946
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.946
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.943
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.942
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.942
OB04G27960 Oryza brachyantha OB04G27960 I 0.942
OBART04G20940 Oryza barthii OBART04G20940 I 0.942
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.942
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.942
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.942
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.942
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.942
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.942
SPL7 Oryza sativa OS04G0551500 I 0.942
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.942
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.942
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.941
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.940
SPL19 Oryza sativa OS11G0496600 I 0.940
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.940
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.940
Cla019331 Citrullus lanatus Cla019331 I 0.940
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.940
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.940
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.940
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.940
TCM_014330 Theobroma cacao TCM_014330 I 0.939
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.938
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.938
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.938
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.938
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.938
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.938
Ca_19449 Cicer arietinum Ca_19449 I 0.938
30138.m003942 Ricinus communis 30138.m003942 I 0.938
30174.m009082 Ricinus communis 30174.m009082 I 0.938
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.938
MDP0000146640 Malus domestica MDP0000146640 I 0.938
MDP0000778465 Malus domestica MDP0000778465 I 0.938
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.937
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.936
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.935
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.935
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.935
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.935
Cla018827 Citrullus lanatus Cla018827 I 0.935
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.934
PK17790.1 Cannabis sativa PK17790.1 I 0.934
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.933
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.933
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.933
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.933
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.932
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.932
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.932
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.931
Si032170m.g Setaria italica Si032170m.g I 0.929
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.929
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.928
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.928
OBART07G15570 Oryza barthii OBART07G15570 I 0.928
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.928
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.928
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.928
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.928
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.928
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.928
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.927
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.927
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.927
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.927
30174.m008805 Ricinus communis 30174.m008805 I 0.927
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.927
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.927
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.927
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.926
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.926
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.926
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.926
Ca_10879 Cicer arietinum Ca_10879 I 0.926
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.926
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.925
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.925
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.924
TCM_005620 Theobroma cacao TCM_005620 I 0.924
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.924
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.924
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.922
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.922
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.922
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.922
Si001804m.g Setaria italica Si001804m.g I 0.921
Si026656m.g Setaria italica Si026656m.g I 0.921
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.921
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.921
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.921
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.921
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.921
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.920
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I 0.919
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I 0.919
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.918
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.918
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.917
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.917
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I 0.917
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.917
Bra021880 Brassica rapa Bra021880 I 0.915
LPERR11G11330 Leersia perrieri LPERR11G11330 I 0.914
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.914
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I 0.913
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.913
Pm010075 Prunus mume Pm010075 I 0.913
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.913
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.912
Pm014154 Prunus mume Pm014154 I 0.912
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.912
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.912
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.911
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.911
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.911
GLYMA07G19770 Glycine max GLYMA07G19770 I 0.910
GLYMA20G00900 Glycine max GLYMA20G00900 I 0.910
MTR_1g035010 Medicago truncatula MTR_1g035010 I 0.910
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.910
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.910
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I 0.910
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.910
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.910
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.909
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.909
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.909
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.908
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.907
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I 0.906
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I 0.903
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.903
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D 0.902
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I 0.902
MDP0000865739 Malus domestica MDP0000865739 I 0.902
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.901
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.901
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.901
Cla009788 Citrullus lanatus Cla009788 I 0.899
Bo3g042890 Brassica oleracea Bo3g042890 I 0.898
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.898
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.898
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.897
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.896
SELMODRAFT_28625 Selaginella moellendorffii SELMODRAFT_28625 I 0.896
SELMODRAFT_28626 Selaginella moellendorffii SELMODRAFT_28626 I 0.896
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.896
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.896
SPL5 Arabidopsis thaliana AT3G15270 D 0.895
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.895
PGSC0003DMG400021902 Solanum tuberosum PGSC0003DMG400021902 I 0.895
Solyc05g015840.2 Solanum lycopersicum Solyc05g015840.2 I 0.895
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.895
TCM_024873 Theobroma cacao TCM_024873 I 0.895
VIT_08s0007g06270 Vitis vinifera VIT_08s0007g06270 I 0.895
29269.m000250 Ricinus communis 29269.m000250 I 0.895
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.895
Eucgr.A02441 Eucalyptus grandis Eucgr.A02441 I 0.895
MDP0000149339 Malus domestica MDP0000149339 I 0.894
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.893
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.892
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.892
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.891
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.891
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.891
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I 0.891
mgf001202m Mimulus guttatus mgf001202m I 0.891
Cla001541 Citrullus lanatus Cla001541 I 0.890
Cucsa.349620 Cucumis sativus Cucsa.349620 I 0.890
PK18312.1 Cannabis sativa PK18312.1 I 0.890
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.889
MTR_1g053715 Medicago truncatula MTR_1g053715 I 0.888
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.888
TCM_031595 Theobroma cacao TCM_031595 I 0.888
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.888
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.888
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.887
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.887
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.887
mgf001295m Mimulus guttatus mgf001295m I 0.887
GLYMA19G32800 Glycine max GLYMA19G32800 I 0.886
Si013747m.g Setaria italica Si013747m.g N 0.886
Cla002263 Citrullus lanatus Cla002263 I 0.886
Eucgr.K01828 Eucalyptus grandis Eucgr.K01828 I 0.886
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.886
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.886
Pavir.Ba01534 Panicum virgatum Pavir.Ba01534 N 0.886
Pavir.Fb00717 Panicum virgatum Pavir.Fb00717 N 0.886
Pavir.J28847 Panicum virgatum Pavir.J28847 N 0.886
Pavir.J30793 Panicum virgatum Pavir.J30793 N 0.886
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.886