Bra004363 (Brassica rapa)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bra004363 T322458_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004363.1-P SBP 71 145

Links

Other SBP family TFs
Other Brassica rapa TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo6g108620 Brassica oleracea Bo6g108620 N 0.985
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.971
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.971
Pm030597 Prunus mume Pm030597 I 0.971
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.970
MDP0000171877 Malus domestica MDP0000171877 I 0.967
MDP0000246046 Malus domestica MDP0000246046 I 0.967
SPL6 Arabidopsis thaliana AT1G69170 I 0.966
Bra038324 Brassica rapa Bra038324 I 0.964
Bo2g062840 Brassica oleracea Bo2g062840 I 0.963
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.963
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.963
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.959
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.959
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.959
MDP0000119458 Malus domestica MDP0000119458 I 0.956
MDP0000193702 Malus domestica MDP0000193702 I 0.956
Ca_24655 Cicer arietinum Ca_24655 I 0.945
PRUPE_ppa003644mg Prunus persica PRUPE_ppa003644mg I 0.940
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.940
Eucgr.B00631 Eucalyptus grandis Eucgr.B00631 I 0.940
gene26117-v1.0-hybrid Fragaria vesca gene26117-v1.0-hybrid I 0.940
Gorai.003G102800 Gossypium raimondii Gorai.003G102800 I 0.940
MDP0000589558 Malus domestica MDP0000589558 I 0.940
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.940
TCM_011483 Theobroma cacao TCM_011483 I 0.935
Pm025028 Prunus mume Pm025028 I 0.935
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.930
SapurV1A.0382s0120 Salix purpurea SapurV1A.0382s0120 I 0.930
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I 0.929
Gorai.013G095700 Gossypium raimondii Gorai.013G095700 I 0.928
Lus10012020.g Linum usitatissimum Lus10012020.g I 0.928
Lus10016275.g Linum usitatissimum Lus10016275.g I 0.928
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I 0.927
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.927
MTR_5g046670 Medicago truncatula MTR_5g046670 I 0.925
PK03565.1 Cannabis sativa PK03565.1 I 0.925
F775_02791 Aegilops tauschii F775_02791 I 0.922
GLYMA01G15134 Glycine max GLYMA01G15134 I 0.922
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.922
Si026656m.g Setaria italica Si026656m.g I 0.922
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.922
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.922
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I 0.922
Pavir.Hb01173 Panicum virgatum Pavir.Hb01173 I 0.922
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.921
Si010262m.g Setaria italica Si010262m.g I 0.919
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I 0.919
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I 0.919
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I 0.919
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.915
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I 0.915
ORGLA11G0121600 Oryza glaberrima ORGLA11G0121600 I 0.914
SPL19 Oryza sativa OS11G0496600 I 0.914
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.914
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I 0.913
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I 0.913
Cla019331 Citrullus lanatus Cla019331 I 0.913
Cucsa.113410 Cucumis sativus Cucsa.113410 I 0.913
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I 0.913
TCM_014330 Theobroma cacao TCM_014330 I 0.912
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.911
GLYMA0005S50 Glycine max GLYMA0005S50 I 0.911
GLYMA04G32002 Glycine max GLYMA04G32002 I 0.911
GLYMA17G08840 Glycine max GLYMA17G08840 I 0.911
MTR_2g461920 Medicago truncatula MTR_2g461920 I 0.911
MTR_4g109770 Medicago truncatula MTR_4g109770 I 0.911
Ca_19449 Cicer arietinum Ca_19449 I 0.911
30174.m009082 Ricinus communis 30174.m009082 I 0.911
Cucsa.198630 Cucumis sativus Cucsa.198630 I 0.911
MDP0000146640 Malus domestica MDP0000146640 I 0.911
MDP0000778465 Malus domestica MDP0000778465 I 0.911
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.910
30138.m003942 Ricinus communis 30138.m003942 I 0.910
Lus10021034.g Linum usitatissimum Lus10021034.g I 0.908
Lus10021141.g Linum usitatissimum Lus10021141.g I 0.908
Lus10023818.g Linum usitatissimum Lus10023818.g I 0.908
POPTR_0008s09750 Populus trichocarpa POPTR_0008s09750 I 0.907
Cla018827 Citrullus lanatus Cla018827 I 0.907
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I 0.906
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I 0.906
Sb06g024630 Sorghum bicolor Sb06g024630 I 0.905
PK17790.1 Cannabis sativa PK17790.1 I 0.905
SPL9 Arabidopsis lyrata scaffold_403069.1 I 0.904
cassava39122.m1 Manihot esculenta cassava39122.m1 I 0.904
Cagra.2636s0004 Capsella grandiflora Cagra.2636s0004 I 0.904
Carubv10023478m.g Capsella rubella Carubv10023478m.g I 0.904
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.904
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I 0.903
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I 0.903
Lus10007984.g Linum usitatissimum Lus10007984.g I 0.903
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I 0.902
Aquca_009_00161 Aquilegia coerulea Aquca_009_00161 I 0.902
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.900
PRUPE_ppa021582mg Prunus persica PRUPE_ppa021582mg I 0.900
Sb05g017510 Sorghum bicolor Sb05g017510 I 0.900
Pm002693 Prunus mume Pm002693 I 0.900
Pm007035 Prunus mume Pm007035 I 0.900
MDP0000297978 Malus domestica MDP0000297978 I 0.900
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I 0.898
GSMUA_AchrUn_randomG05850_001 Musa acuminata GSMUA_AchrUn_randomG05850_001 I 0.897
Cla021411 Citrullus lanatus Cla021411 I 0.897
GSMUA_Achr7G22940_001 Musa acuminata GSMUA_Achr7G22940_001 I 0.896
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.896
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.896
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.896
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.895
OMERI11G11920 Oryza meridionalis OMERI11G11920 I 0.895
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I 0.895
Bostr.25993s0559 Boechera stricta Bostr.25993s0559 I 0.895
Thhalv10016816m.g Eutrema salsugineum Thhalv10016816m.g I 0.895
Bo4g015800 Brassica oleracea Bo4g015800 I 0.892
Bra004674 Brassica rapa Bra004674 I 0.892
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.892
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.890
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.889
GSMUA_Achr9G01380_001 Musa acuminata GSMUA_Achr9G01380_001 I 0.889
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.889
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.888
OB04G27960 Oryza brachyantha OB04G27960 I 0.888
OBART04G20940 Oryza barthii OBART04G20940 I 0.888
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.888
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.888
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.888
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.888
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.888
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.888
SPL7 Oryza sativa OS04G0551500 I 0.888
PGSC0003DMG400028308 Solanum tuberosum PGSC0003DMG400028308 I 0.888
Si001804m.g Setaria italica Si001804m.g I 0.888
Solyc05g012040.2 Solanum lycopersicum Solyc05g012040.2 I 0.888
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.888
Pavir.Ea03909 Panicum virgatum Pavir.Ea03909 I 0.888
Pavir.J02262 Panicum virgatum Pavir.J02262 I 0.888
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.887
GRMZM2G098557 Zea mays GRMZM2G098557 I 0.886
GRMZM2G169270 Zea mays GRMZM2G169270 I 0.886
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I 0.886
Sb07g027420 Sorghum bicolor Sb07g027420 I 0.886
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I 0.886