CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra004363
(
Brassica rapa
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
Bra004363
T322458_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra004363.1-P
SBP
71
145
CQVHGCNMDLSSSKDYHKRHRVCEAHSKTSVVIVNGVEQRFCQQCSRFHFLSEFDNGKRSCRRRLAGHNERRRKP
Links
Other
SBP
family TFs
Other
Brassica rapa
TFs
140 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30138.m003942
Ricinus communis
30138.m003942
I
0.910
30174.m009082
Ricinus communis
30174.m009082
I
0.911
AMTR_s00022p00198330
Amborella trichopoda
AMTR_s00022p00198330
I
0.911
AMTR_s00047p00197010
Amborella trichopoda
AMTR_s00047p00197010
I
0.906
Aquca_002_00889
Aquilegia coerulea
Aquca_002_00889
I
0.898
Aquca_009_00161
Aquilegia coerulea
Aquca_009_00161
I
0.902
BGIOSGA016888
Oryza indica
BGIOSGA016888
I
0.888
Bo2g062840
Brassica oleracea
Bo2g062840
I
0.963
Bo4g015800
Brassica oleracea
Bo4g015800
I
0.892
Bo6g108620
Brassica oleracea
Bo6g108620
N
0.985
Bostr.10273s0456
Boechera stricta
Bostr.10273s0456
N
0.930
Bostr.25993s0559
Boechera stricta
Bostr.25993s0559
I
0.895
Bra004674
Brassica rapa
Bra004674
I
0.892
Bra038324
Brassica rapa
Bra038324
I
0.964
BRADI1G26720
Brachypodium distachyon
BRADI1G26720
I
0.889
Cagra.0537s0003
Capsella grandiflora
Cagra.0537s0003
I
0.959
Cagra.2636s0004
Capsella grandiflora
Cagra.2636s0004
I
0.904
Carubv10020369m.g
Capsella rubella
Carubv10020369m.g
I
0.959
Carubv10023478m.g
Capsella rubella
Carubv10023478m.g
I
0.904
cassava39122.m1
Manihot esculenta
cassava39122.m1
I
0.904
cassava43385.valid.m1
Manihot esculenta
cassava43385.valid.m1
I
0.902
cassava7440.valid.m1
Manihot esculenta
cassava7440.valid.m1
I
0.895
Ca_19449
Cicer arietinum
Ca_19449
I
0.911
Ca_24655
Cicer arietinum
Ca_24655
I
0.945
Ciclev10019546m.g
Citrus clementina
Ciclev10019546m.g
I
0.919
Ciclev10031270m.g
Citrus clementina
Ciclev10031270m.g
I
0.940
Cla018827
Citrullus lanatus
Cla018827
I
0.907
Cla019331
Citrullus lanatus
Cla019331
I
0.913
Cla021411
Citrullus lanatus
Cla021411
I
0.897
Cucsa.113410
Cucumis sativus
Cucsa.113410
I
0.913
Cucsa.198630
Cucumis sativus
Cucsa.198630
I
0.911
Cucsa.259800
Cucumis sativus
Cucsa.259800
I
0.889
Eucgr.B00631
Eucalyptus grandis
Eucgr.B00631
I
0.940
evm.TU.supercontig_2783.1
Carica papaya
evm.TU.supercontig_2783.1
I
0.922
F775_02791
Aegilops tauschii
F775_02791
I
0.922
fgenesh1_pg.C_scaffold_2001253
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001253
I
0.971
gene04565-v1.0-hybrid
Fragaria vesca
gene04565-v1.0-hybrid
I
0.970
gene22660-v1.0-hybrid
Fragaria vesca
gene22660-v1.0-hybrid
I
0.904
gene26117-v1.0-hybrid
Fragaria vesca
gene26117-v1.0-hybrid
I
0.940
GLYMA0005S50
Glycine max
GLYMA0005S50
I
0.911
GLYMA01G08056
Glycine max
GLYMA01G08056
I
0.963
GLYMA01G15134
Glycine max
GLYMA01G15134
I
0.922
GLYMA02G13371
Glycine max
GLYMA02G13371
I
0.963
GLYMA04G32002
Glycine max
GLYMA04G32002
I
0.911
GLYMA17G08840
Glycine max
GLYMA17G08840
I
0.911
Gorai.003G102800
Gossypium raimondii
Gorai.003G102800
I
0.940
Gorai.013G095700
Gossypium raimondii
Gorai.013G095700
I
0.928
GRMZM2G098557
Zea mays
GRMZM2G098557
I
0.886
GRMZM2G148467
Zea mays
GRMZM2G148467
I
0.915
GRMZM2G169270
Zea mays
GRMZM2G169270
I
0.886
GSMUA_Achr1G08440_001
Musa acuminata
GSMUA_Achr1G08440_001
I
0.887
GSMUA_Achr2G03070_001
Musa acuminata
GSMUA_Achr2G03070_001
I
0.910
GSMUA_Achr4G16050_001
Musa acuminata
GSMUA_Achr4G16050_001
I
0.929
GSMUA_Achr4G23650_001
Musa acuminata
GSMUA_Achr4G23650_001
I
0.890
GSMUA_Achr5G25090_001
Musa acuminata
GSMUA_Achr5G25090_001
I
0.927
GSMUA_Achr7G20620_001
Musa acuminata
GSMUA_Achr7G20620_001
I
0.886
GSMUA_Achr7G22940_001
Musa acuminata
GSMUA_Achr7G22940_001
I
0.896
GSMUA_Achr9G01380_001
Musa acuminata
GSMUA_Achr9G01380_001
I
0.889
GSMUA_AchrUn_randomG05850_001
Musa acuminata
GSMUA_AchrUn_randomG05850_001
I
0.897
LjSGA_121222.1
Lotus japonicus
LjSGA_121222.1
I
0.886
Lus10000643.g
Linum usitatissimum
Lus10000643.g
I
0.921
Lus10007984.g
Linum usitatissimum
Lus10007984.g
I
0.903
Lus10012020.g
Linum usitatissimum
Lus10012020.g
I
0.928
Lus10016275.g
Linum usitatissimum
Lus10016275.g
I
0.928
Lus10021034.g
Linum usitatissimum
Lus10021034.g
I
0.908
Lus10021141.g
Linum usitatissimum
Lus10021141.g
I
0.908
Lus10023818.g
Linum usitatissimum
Lus10023818.g
I
0.908
Lus10036812.g
Linum usitatissimum
Lus10036812.g
I
0.914
MDP0000119458
Malus domestica
MDP0000119458
I
0.956
MDP0000146640
Malus domestica
MDP0000146640
I
0.911
MDP0000171877
Malus domestica
MDP0000171877
I
0.967
MDP0000193702
Malus domestica
MDP0000193702
I
0.956
MDP0000246046
Malus domestica
MDP0000246046
I
0.967
MDP0000297978
Malus domestica
MDP0000297978
I
0.900
MDP0000589558
Malus domestica
MDP0000589558
I
0.940
MDP0000778465
Malus domestica
MDP0000778465
I
0.911
MLOC_13032
Hordeum vulgare
MLOC_13032
I
0.896
MLOC_69667
Hordeum vulgare
MLOC_69667
I
0.922
MTR_2g461920
Medicago truncatula
MTR_2g461920
I
0.911
MTR_4g109770
Medicago truncatula
MTR_4g109770
I
0.911
MTR_5g046670
Medicago truncatula
MTR_5g046670
I
0.925
MTR_7g028740
Medicago truncatula
MTR_7g028740
I
0.895
OB04G27960
Oryza brachyantha
OB04G27960
I
0.888
OBART04G20940
Oryza barthii
OBART04G20940
I
0.888
OGLUM04G20870
Oryza glumaepatula
OGLUM04G20870
I
0.888
OMERI04G17360
Oryza meridionalis
OMERI04G17360
I
0.888
OMERI11G11920
Oryza meridionalis
OMERI11G11920
I
0.895
ONIVA04G19190
Oryza nivara
ONIVA04G19190
I
0.888
OPUNC04G18620
Oryza punctata
OPUNC04G18620
I
0.888
orange1.1g008680m.g
Citrus sinensis
orange1.1g008680m.g
I
0.919
orange1.1g009653m.g
Citrus sinensis
orange1.1g009653m.g
I
0.940
ORGLA04G0180000
Oryza glaberrima
ORGLA04G0180000
I
0.888
ORGLA11G0121600
Oryza glaberrima
ORGLA11G0121600
I
0.914
ORUFI04G22540
Oryza rufipogon
ORUFI04G22540
I
0.888
Pavir.Ea03909
Panicum virgatum
Pavir.Ea03909
I
0.888
Pavir.Fa00457
Panicum virgatum
Pavir.Fa00457
I
0.915
Pavir.Hb01173
Panicum virgatum
Pavir.Hb01173
I
0.922
Pavir.J02262
Panicum virgatum
Pavir.J02262
I
0.888
PGSC0003DMG400024527
Solanum tuberosum
PGSC0003DMG400024527
I
0.903
PGSC0003DMG400028308
Solanum tuberosum
PGSC0003DMG400028308
I
0.888
PK03565.1
Cannabis sativa
PK03565.1
I
0.925
PK17790.1
Cannabis sativa
PK17790.1
I
0.905
Pm002693
Prunus mume
Pm002693
I
0.900
Pm007035
Prunus mume
Pm007035
I
0.900
Pm025028
Prunus mume
Pm025028
I
0.935
Pm030597
Prunus mume
Pm030597
I
0.971
POPTR_0008s09750
Populus trichocarpa
POPTR_0008s09750
I
0.907
POPTR_0010s16400
Populus trichocarpa
POPTR_0010s16400
I
0.913
POPTR_0015s07140
Populus trichocarpa
POPTR_0015s07140
I
0.906
PRUPE_ppa003644mg
Prunus persica
PRUPE_ppa003644mg
I
0.940
PRUPE_ppa007056mg
Prunus persica
PRUPE_ppa007056mg
I
0.900
PRUPE_ppa017695mg
Prunus persica
PRUPE_ppa017695mg
I
0.971
PRUPE_ppa021582mg
Prunus persica
PRUPE_ppa021582mg
I
0.900
PRUPE_ppa023657mg
Prunus persica
PRUPE_ppa023657mg
I
0.892
SapurV1A.0072s0340
Salix purpurea
SapurV1A.0072s0340
I
0.913
SapurV1A.0176s0470
Salix purpurea
SapurV1A.0176s0470
I
0.927
SapurV1A.0382s0120
Salix purpurea
SapurV1A.0382s0120
I
0.930
Sb05g017510
Sorghum bicolor
Sb05g017510
I
0.900
Sb06g024630
Sorghum bicolor
Sb06g024630
I
0.905
Sb07g027420
Sorghum bicolor
Sb07g027420
I
0.886
Si001804m.g
Setaria italica
Si001804m.g
I
0.888
Si010262m.g
Setaria italica
Si010262m.g
I
0.919
Si026656m.g
Setaria italica
Si026656m.g
I
0.922
Solyc03g114850.2
Solanum lycopersicum
Solyc03g114850.2
I
0.903
Solyc05g012040.2
Solanum lycopersicum
Solyc05g012040.2
I
0.888
SPL19
Oryza sativa
OS11G0496600
I
0.914
SPL3
Vitis vinifera
VIT_10s0003g00050
I
0.888
SPL6
Arabidopsis thaliana
AT1G69170
I
0.966
SPL7
Oryza sativa
OS04G0551500
I
0.888
SPL9
Arabidopsis lyrata
scaffold_403069.1
I
0.904
TCM_011483
Theobroma cacao
TCM_011483
I
0.935
TCM_014330
Theobroma cacao
TCM_014330
I
0.912
Thhalv10016816m.g
Eutrema salsugineum
Thhalv10016816m.g
I
0.895
Thhalv10018638m.g
Eutrema salsugineum
Thhalv10018638m.g
I
0.959
Traes_2AL_B45245746
Triticum aestivum
Traes_2AL_B45245746
I
0.922
Traes_2BL_69E6AB6D1
Triticum aestivum
Traes_2BL_69E6AB6D1
I
0.922
Traes_2BS_186EA570A
Triticum aestivum
Traes_2BS_186EA570A
I
0.896
TRIUR3_23102
Triticum urartu
TRIUR3_23102
I
0.896
VIT_01s0011g00130
Vitis vinifera
VIT_01s0011g00130
I
0.919
VIT_17s0000g05020
Vitis vinifera
VIT_17s0000g05020
I
0.913