CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra033221
(
Brassica rapa
)
SBP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03110 (SBP)
IPR004333
Bra033221
T322479_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPL8
M02714_2.00
Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH
SELEX
Mathelier et al.(2014)
MA0578.1
0.987
1.000
fgenesh1_pg.scaffold_252000020
M02481_2.00
Physcomitrella patens
NNNKRCVNN
NNBGYMNNN
PBM
Weirauch et al.(2014)
pTH8491
0.936
0.813
fgenesh1_pg.scaffold_194000034
M02480_2.00
Physcomitrella patens
NNNGTACNNN
NNNGTACNNN
PBM
Weirauch et al.(2014)
pTH8580
0.928
0.800
For this family, TFs with SR scores >
0.885
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra033221.1-P
SBP
185
259
CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKC
Links
Other
SBP
family TFs
Other
Brassica rapa
TFs
124 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AMTR_s00019p00235390
Amborella trichopoda
AMTR_s00019p00235390
I
0.935
AMTR_s00106p00144050
Amborella trichopoda
AMTR_s00106p00144050
I
0.910
Aquca_024_00116
Aquilegia coerulea
Aquca_024_00116
I
0.959
SPL8
Arabidopsis lyrata
fgenesh2_kg.1__23__AT1G02065.1
I
0.987
SPL8
Arabidopsis thaliana
AT1G02065
D
0.987
Bostr.5325s0127
Boechera stricta
Bostr.5325s0127
I
0.987
BRADI1G31390
Brachypodium distachyon
BRADI1G31390
I
0.906
BRADI3G05720
Brachypodium distachyon
BRADI3G05720
I
0.908
BRADI5G24670
Brachypodium distachyon
BRADI5G24670
I
0.930
Bo5g001290
Brassica oleracea
Bo5g001290
I
0.987
Bo8g118210
Brassica oleracea
Bo8g118210
I
0.987
Bra032662
Brassica rapa
Bra032662
I
0.987
PK25779.1
Cannabis sativa
PK25779.1
I
0.984
Cagra.1968s0141
Capsella grandiflora
Cagra.1968s0141
I
0.987
Carubv10009506m.g
Capsella rubella
Carubv10009506m.g
I
0.986
evm.TU.supercontig_149.10
Carica papaya
evm.TU.supercontig_149.10
I
0.984
Ca_18942
Cicer arietinum
Ca_18942
I
0.984
Cla006776
Citrullus lanatus
Cla006776
I
0.984
Cla020006
Citrullus lanatus
Cla020006
I
0.911
Ciclev10021106m.g
Citrus clementina
Ciclev10021106m.g
I
0.983
orange1.1g020302m.g
Citrus sinensis
orange1.1g020302m.g
I
0.983
Cucsa.120620
Cucumis sativus
Cucsa.120620
I
0.975
Cucsa.126820
Cucumis sativus
Cucsa.126820
I
0.907
Eucgr.E01600
Eucalyptus grandis
Eucgr.E01600
I
0.984
Thhalv10008083m.g
Eutrema salsugineum
Thhalv10008083m.g
I
0.987
gene04786-v1.0-hybrid
Fragaria vesca
gene04786-v1.0-hybrid
I
0.983
GLYMA01G15258
Glycine max
GLYMA01G15258
I
0.979
GLYMA03G27180
Glycine max
GLYMA03G27180
I
0.984
GLYMA07G14610
Glycine max
GLYMA07G14610
I
0.984
Gorai.001G176000
Gossypium raimondii
Gorai.001G176000
I
0.984
Gorai.008G107400
Gossypium raimondii
Gorai.008G107400
I
0.984
MLOC_326
Hordeum vulgare
MLOC_326
I
0.915
MLOC_51510
Hordeum vulgare
MLOC_51510
I
0.902
MLOC_57503
Hordeum vulgare
MLOC_57503
I
0.930
LPERR02G05080
Leersia perrieri
LPERR02G05080
I
0.920
LPERR04G23580
Leersia perrieri
LPERR04G23580
I
0.930
LPERR06G19480
Leersia perrieri
LPERR06G19480
I
0.915
Lus10028181.g
Linum usitatissimum
Lus10028181.g
I
0.981
Lus10042882.g
Linum usitatissimum
Lus10042882.g
I
0.981
MDP0000803116
Malus domestica
MDP0000803116
I
0.982
cassava13944.valid.m1
Manihot esculenta
cassava13944.valid.m1
I
0.976
cassava19899.m1
Manihot esculenta
cassava19899.m1
I
0.984
MTR_8g005960
Medicago truncatula
MTR_8g005960
I
0.985
mgf016085m
Mimulus guttatus
mgf016085m
I
0.984
GSMUA_Achr10G06210_001
Musa acuminata
GSMUA_Achr10G06210_001
I
0.951
GSMUA_Achr2G11940_001
Musa acuminata
GSMUA_Achr2G11940_001
I
0.956
GSMUA_Achr3G00810_001
Musa acuminata
GSMUA_Achr3G00810_001
I
0.945
GSMUA_Achr4G20590_001
Musa acuminata
GSMUA_Achr4G20590_001
I
0.947
GSMUA_Achr4G24610_001
Musa acuminata
GSMUA_Achr4G24610_001
I
0.950
GSMUA_Achr4G28960_001
Musa acuminata
GSMUA_Achr4G28960_001
I
0.960
GSMUA_Achr7G05010_001
Musa acuminata
GSMUA_Achr7G05010_001
I
0.926
GSMUA_Achr7G08750_001
Musa acuminata
GSMUA_Achr7G08750_001
I
0.960
OBART04G27990
Oryza barthii
OBART04G27990
I
0.930
OBART06G23500
Oryza barthii
OBART06G23500
I
0.886
OB02G15090
Oryza brachyantha
OB02G15090
I
0.920
OB04G34990
Oryza brachyantha
OB04G34990
I
0.930
OB06G31100
Oryza brachyantha
OB06G31100
I
0.915
ORGLA02G0053800
Oryza glaberrima
ORGLA02G0053800
I
0.931
ORGLA04G0242500
Oryza glaberrima
ORGLA04G0242500
I
0.930
ORGLA06G0196600
Oryza glaberrima
ORGLA06G0196600
I
0.915
OGLUM04G27880
Oryza glumaepatula
OGLUM04G27880
I
0.930
OGLUM06G24700
Oryza glumaepatula
OGLUM06G24700
I
0.915
BGIOSGA007655
Oryza indica
BGIOSGA007655
I
0.931
BGIOSGA017275
Oryza indica
BGIOSGA017275
I
0.930
SPL10
Oryza indica
BGIOSGA023408
I
0.915
OLONG_021174
Oryza longistaminata
OLONG_021174
I
0.930
OMERI02G06720
Oryza meridionalis
OMERI02G06720
I
0.931
OMERI04G23390
Oryza meridionalis
OMERI04G23390
I
0.930
OMERI06G23430
Oryza meridionalis
OMERI06G23430
I
0.915
ONIVA01G24470
Oryza nivara
ONIVA01G24470
I
0.915
ONIVA04G26660
Oryza nivara
ONIVA04G26660
I
0.930
OPUNC02G05050
Oryza punctata
OPUNC02G05050
I
0.909
OPUNC04G25460
Oryza punctata
OPUNC04G25460
I
0.930
OPUNC06G21190
Oryza punctata
OPUNC06G21190
I
0.915
ORUFI04G29620
Oryza rufipogon
ORUFI04G29620
I
0.930
ORUFI06G25170
Oryza rufipogon
ORUFI06G25170
I
0.915
SPL5
Oryza sativa
OS02G0177300
I
0.931
SPL8
Oryza sativa
OS04G0656500
I
0.930
SPL10
Oryza sativa
OS06G0659100
I
0.915
Pavir.Ab00520
Panicum virgatum
Pavir.Ab00520
I
0.919
Pavir.Da00293
Panicum virgatum
Pavir.Da00293
I
0.915
Pavir.Db00525
Panicum virgatum
Pavir.Db00525
I
0.915
Pavir.Ga00066
Panicum virgatum
Pavir.Ga00066
I
0.930
Pavir.Gb00284
Panicum virgatum
Pavir.Gb00284
I
0.930
fgenesh1_pg.scaffold_118000004
Physcomitrella patens
fgenesh1_pg.scaffold_118000004
I
0.912
fgenesh1_pg.scaffold_194000034
Physcomitrella patens
fgenesh1_pg.scaffold_194000034
D
0.928
fgenesh1_pg.scaffold_23000047
Physcomitrella patens
fgenesh1_pg.scaffold_23000047
I
0.953
fgenesh1_pg.scaffold_252000020
Physcomitrella patens
fgenesh1_pg.scaffold_252000020
D
0.936
fgenesh1_pg.scaffold_337000032
Physcomitrella patens
fgenesh1_pg.scaffold_337000032
I
0.952
fgenesh1_pg.scaffold_50000085
Physcomitrella patens
fgenesh1_pg.scaffold_50000085
I
0.933
POPTR_0002s14320
Populus trichocarpa
POPTR_0002s14320
I
0.984
POPTR_0014s05680
Populus trichocarpa
POPTR_0014s05680
I
0.984
Pm017777
Prunus mume
Pm017777
I
0.974
PRUPE_ppa008560mg
Prunus persica
PRUPE_ppa008560mg
I
0.974
30174.m008803
Ricinus communis
30174.m008803
I
0.984
SapurV1A.0033s0300
Salix purpurea
SapurV1A.0033s0300
I
0.981
SapurV1A.0382s0100
Salix purpurea
SapurV1A.0382s0100
I
0.984
SELMODRAFT_17706
Selaginella moellendorffii
SELMODRAFT_17706
I
0.928
SELMODRAFT_17777
Selaginella moellendorffii
SELMODRAFT_17777
I
0.924
SELMODRAFT_28629
Selaginella moellendorffii
SELMODRAFT_28629
I
0.925
SELMODRAFT_28630
Selaginella moellendorffii
SELMODRAFT_28630
I
0.928
SELMODRAFT_49502
Selaginella moellendorffii
SELMODRAFT_49502
I
0.942
SELMODRAFT_59543
Selaginella moellendorffii
SELMODRAFT_59543
I
0.942
SELMODRAFT_59884
Selaginella moellendorffii
SELMODRAFT_59884
I
0.925
SELMODRAFT_7674
Selaginella moellendorffii
SELMODRAFT_7674
I
0.925
Si006559m.g
Setaria italica
Si006559m.g
I
0.915
Si017338m.g
Setaria italica
Si017338m.g
I
0.930
Si022315m.g
Setaria italica
Si022315m.g
I
0.930
Solyc01g090730.2
Solanum lycopersicum
Solyc01g090730.2
I
0.984
Solyc10g018780.1
Solanum lycopersicum
Solyc10g018780.1
I
0.984
PGSC0003DMG400026027
Solanum tuberosum
PGSC0003DMG400026027
I
0.984
PGSC0003DMG400029162
Solanum tuberosum
PGSC0003DMG400029162
I
0.984
Sb04g005180
Sorghum bicolor
Sb04g005180
I
0.908
Sb06g031290
Sorghum bicolor
Sb06g031290
I
0.930
Sb10g026200
Sorghum bicolor
Sb10g026200
I
0.915
TCM_005622
Theobroma cacao
TCM_005622
I
0.984
Traes_7DL_ED348696E
Triticum aestivum
Traes_7DL_ED348696E
I
0.915
TRIUR3_34351
Triticum urartu
TRIUR3_34351
I
0.930
SPL8
Vitis vinifera
VIT_15s0021g02300
I
0.981
GRMZM2G036297
Zea mays
GRMZM2G036297
I
0.930
GRMZM2G058588
Zea mays
GRMZM2G058588
I
0.928
GRMZM2G101499
Zea mays
GRMZM2G101499
I
0.912
GRMZM2G111136
Zea mays
GRMZM2G111136
I
0.908
GRMZM2G168229
Zea mays
GRMZM2G168229
I
0.930