GLYMA12G35460 (Glycine max)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GLYMA12G35460 T322583_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK22320.1
M02483_2.00 		Cannabis sativa
NNGTACGGNN
NNCCGTACNN		 PBM
Weirauch et al.(2014)
pTH9723 		0.937 0.773
PK06791.1
M02482_2.00 		Cannabis sativa
NNGTACGRN
NYCGTACNN		 PBM
Weirauch et al.(2014)
pTH9583 		0.913 0.733
SPL12
M02475_2.00 		Arabidopsis thaliana
NGTACGDN
NHCGTACN		 PBM
Weirauch et al.(2014)
pTH7500 		0.912 0.707
SPL4
M02472_2.00 		Arabidopsis thaliana
NRTACDDNN
NNHHGTAYN		 PBM
Weirauch et al.(2014)
pTH7408 		0.897 0.747
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA12G35460.1 SBP 66 140

Links

Other SBP family TFs
Other Glycine max TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA13G35000 Glycine max GLYMA13G35000 I 0.981
Ca_22526 Cicer arietinum Ca_22526 I 0.965
MTR_2g078770 Medicago truncatula MTR_2g078770 I 0.963
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.947
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.946
Pm011381 Prunus mume Pm011381 I 0.946
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.941
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.939
28211.m000132 Ricinus communis 28211.m000132 I 0.937
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.937
PK22320.1 Cannabis sativa PK22320.1 D 0.937
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.936
Cla023735 Citrullus lanatus Cla023735 I 0.936
MDP0000158607 Malus domestica MDP0000158607 I 0.936
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.936
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.935
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.935
Ca_16243 Cicer arietinum Ca_16243 I 0.935
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.933
TCM_031595 Theobroma cacao TCM_031595 I 0.931
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.931
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.930
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.928
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I 0.926
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.924
Pm014154 Prunus mume Pm014154 I 0.924
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.923
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.921
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I 0.918
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I 0.917
29983.m003158 Ricinus communis 29983.m003158 I 0.917
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I 0.916
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.916
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I 0.916
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I 0.916
MDP0000156994 Malus domestica MDP0000156994 I 0.915
MDP0000861601 Malus domestica MDP0000861601 I 0.915
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I 0.913
Ca_03548 Cicer arietinum Ca_03548 I 0.913
30076.m004574 Ricinus communis 30076.m004574 I 0.913
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I 0.913
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I 0.913
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I 0.913
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I 0.913
Lus10004523.g Linum usitatissimum Lus10004523.g I 0.913
Lus10010071.g Linum usitatissimum Lus10010071.g I 0.913
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I 0.913
PK06791.1 Cannabis sativa PK06791.1 D 0.913
SPL12 Arabidopsis thaliana AT3G60030 D 0.912
MTR_1g086250 Medicago truncatula MTR_1g086250 I 0.912
TCM_004922 Theobroma cacao TCM_004922 I 0.912
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I 0.912
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I 0.912
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I 0.912
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.911
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I 0.911
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.911
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.911
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I 0.911
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.909
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.909
Cla002263 Citrullus lanatus Cla002263 I 0.909
mgf009459m Mimulus guttatus mgf009459m I 0.909
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I 0.909
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I 0.908
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I 0.908
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I 0.908
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I 0.908
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I 0.908
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I 0.908
SPL12 Arabidopsis lyrata scaffold_503227.1 I 0.906
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.906
GLYMA02G01160 Glycine max GLYMA02G01160 I 0.905
GLYMA10G01211 Glycine max GLYMA10G01211 I 0.905
GRMZM2G156756 Zea mays GRMZM2G156756 I 0.905
Sb01g002530 Sorghum bicolor Sb01g002530 I 0.905
Si034095m.g Setaria italica Si034095m.g I 0.905
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I 0.905
Pavir.J01500 Panicum virgatum Pavir.J01500 I 0.905
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I 0.905
TCM_008150 Theobroma cacao TCM_008150 I 0.904
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I 0.903
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.902
MTR_7g110320 Medicago truncatula MTR_7g110320 I 0.902
OB08G27190 Oryza brachyantha OB08G27190 I 0.902
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.902
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.902
Ca_01036 Cicer arietinum Ca_01036 I 0.902
29889.m003388 Ricinus communis 29889.m003388 I 0.902
Bo4g005730 Brassica oleracea Bo4g005730 I 0.901
Bra041037 Brassica rapa Bra041037 I 0.901
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I 0.901
GLYMA09G09790 Glycine max GLYMA09G09790 I 0.900
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.900
mgf001202m Mimulus guttatus mgf001202m I 0.900
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.900
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I 0.900
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.900
GLYMA17G04400 Glycine max GLYMA17G04400 I 0.899
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.899
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I 0.899
TCM_021482 Theobroma cacao TCM_021482 I 0.899
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.899
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.899
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I 0.899
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.899
MDP0000180408 Malus domestica MDP0000180408 I 0.899
GLYMA15G21860 Glycine max GLYMA15G21860 I 0.898
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I 0.898
AMTR_s00062p00211520 Amborella trichopoda AMTR_s00062p00211520 I 0.897
SPL4 Arabidopsis thaliana AT1G53160 D 0.897
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I 0.897
Carubv10016658m.g Capsella rubella Carubv10016658m.g I 0.897
MDP0000919694 Malus domestica MDP0000919694 I 0.897
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I 0.897
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I 0.897
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I 0.896
Bra038101 Brassica rapa Bra038101 I 0.895
30170.m014245 Ricinus communis 30170.m014245 I 0.895
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I 0.895
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I 0.895
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I 0.895
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I 0.895
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.895
PK25661.1 Cannabis sativa PK25661.1 I 0.895
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I 0.894
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.894
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I 0.894
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I 0.893
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I 0.893
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.893
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I 0.893
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I 0.893
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.893
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.892
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.892
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I 0.892
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.892
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.892
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I 0.892
MDP0000919693 Malus domestica MDP0000919693 I 0.892
Bo5g127310 Brassica oleracea Bo5g127310 I 0.891
Bra027265 Brassica rapa Bra027265 I 0.891
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I 0.891
F775_31139 Aegilops tauschii F775_31139 I 0.891
MLOC_4830 Hordeum vulgare MLOC_4830 I 0.891
OB03G47050 Oryza brachyantha OB03G47050 I 0.891
OBART03G39900 Oryza barthii OBART03G39900 I 0.891
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I 0.891
OMERI03G36740 Oryza meridionalis OMERI03G36740 I 0.891
ONIVA03G41820 Oryza nivara ONIVA03G41820 I 0.891
OPUNC03G37130 Oryza punctata OPUNC03G37130 I 0.891
OPUNC03G37170 Oryza punctata OPUNC03G37170 I 0.891
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I 0.891
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I 0.891
SPL6 Oryza sativa OS03G0833300 I 0.891
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I 0.891
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I 0.891
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I 0.891
TRIUR3_33729 Triticum urartu TRIUR3_33729 I 0.891
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.890
GLYMA07G36180 Glycine max GLYMA07G36180 I 0.890
MTR_2g046550 Medicago truncatula MTR_2g046550 I 0.890
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I 0.890
Ca_18591 Cicer arietinum Ca_18591 I 0.890
mgf025134m Mimulus guttatus mgf025134m I 0.890
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I 0.890
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.890
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I 0.890
Bo4g042390 Brassica oleracea Bo4g042390 I 0.889
Bra005470 Brassica rapa Bra005470 I 0.889
TCM_029832 Theobroma cacao TCM_029832 I 0.889
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.889
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.889
LPERR03G34030 Leersia perrieri LPERR03G34030 I 0.888
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.888
Bo6g120690 Brassica oleracea Bo6g120690 I 0.887
Bra015732 Brassica rapa Bra015732 I 0.887
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.887