GRMZM2G058588 (Zea mays)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 GRMZM2G058588 T322602_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.954 0.827
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.948 0.813
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.928 0.800
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G058588_P01 SBP 177 252

Links

Other SBP family TFs
Other Zea mays TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.990
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.990
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.990
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.990
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.990
OB04G34990 Oryza brachyantha OB04G34990 I 0.990
OBART04G27990 Oryza barthii OBART04G27990 I 0.990
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.990
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.990
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.990
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.990
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.990
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.990
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.990
SPL8 Oryza sativa OS04G0656500 I 0.990
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.990
Si022315m.g Setaria italica Si022315m.g I 0.990
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.990
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.990
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.990
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.985
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.954
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.952
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.950
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.950
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.949
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.948
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.942
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.940
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.940
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.940
30190.m011329 Ricinus communis 30190.m011329 I 0.939
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.937
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.935
OB02G15090 Oryza brachyantha OB02G15090 I 0.935
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.934
SPL8 Arabidopsis thaliana AT1G02065 D 0.928
Bo5g001290 Brassica oleracea Bo5g001290 I 0.928
Bo8g118210 Brassica oleracea Bo8g118210 I 0.928
Bra032662 Brassica rapa Bra032662 I 0.928
Bra033221 Brassica rapa Bra033221 I 0.928
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.928
mgf016085m Mimulus guttatus mgf016085m I 0.928
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.928
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.928
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.928
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.928
SPL10 Oryza indica BGIOSGA023408 I 0.927
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.927
MLOC_326 Hordeum vulgare MLOC_326 I 0.927
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.927
OB06G31100 Oryza brachyantha OB06G31100 I 0.927
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.927
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.927
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.927
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.927
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.927
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.927
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.927
SPL10 Oryza sativa OS06G0659100 I 0.927
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.927
Si006559m.g Setaria italica Si006559m.g I 0.927
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.927
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.927
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.927
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.925
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.925
TCM_005622 Theobroma cacao TCM_005622 I 0.925
30174.m008803 Ricinus communis 30174.m008803 I 0.925
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.925
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.925
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.925
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.925
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.925
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.925
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.925
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.925
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.924
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.924
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.924
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.924
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.924
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.924
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.924
Ca_18942 Cicer arietinum Ca_18942 I 0.924
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.924
PK25779.1 Cannabis sativa PK25779.1 I 0.924
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.923
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.922
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.921
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.921
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.921
MDP0000803116 Malus domestica MDP0000803116 I 0.921
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.920
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.920
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.920
Cla006776 Citrullus lanatus Cla006776 I 0.920
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.920
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.919
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.919
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.917
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.915
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.915
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.915
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.914
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.914
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.914
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.912
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.912
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.910
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.909
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.904
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.904
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.904
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.904
SPL5 Oryza sativa OS02G0177300 I 0.904
mgf011616m Mimulus guttatus mgf011616m I 0.904
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.901
OBART06G23500 Oryza barthii OBART06G23500 I 0.900
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.896
Si017338m.g Setaria italica Si017338m.g I 0.896
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.894
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.894
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.893
Cla020006 Citrullus lanatus Cla020006 I 0.893
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.890
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.890
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.889
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.888
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.887
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.887
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.887
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.887
Pm017777 Prunus mume Pm017777 I 0.887
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.886