MLOC_6525 (Hordeum vulgare)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 MLOC_6525 T322724_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.915 0.733
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.915 0.733
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.915 0.733
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_6525.1 SBP 175 249
MLOC_6525.2 SBP 175 239

Links

Other SBP family TFs
Other Hordeum vulgare TFs

104 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.983
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.972
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.970
SPL10 Oryza indica BGIOSGA023408 I 0.969
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.969
MLOC_326 Hordeum vulgare MLOC_326 I 0.969
OB06G31100 Oryza brachyantha OB06G31100 I 0.969
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.969
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.969
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.969
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.969
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.969
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.969
SPL10 Oryza sativa OS06G0659100 I 0.969
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.969
Si006559m.g Setaria italica Si006559m.g I 0.969
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.969
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.969
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.969
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.968
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.966
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.966
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.966
F775_20508 Aegilops tauschii F775_20508 N 0.963
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.963
Traes_7DL_2D8356B05 Triticum aestivum Traes_7DL_2D8356B05 N 0.963
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.960
OB02G15090 Oryza brachyantha OB02G15090 I 0.960
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.960
TRIUR3_34424 Triticum urartu TRIUR3_34424 N 0.958
OBART06G23500 Oryza barthii OBART06G23500 I 0.954
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.950
Si017338m.g Setaria italica Si017338m.g I 0.950
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.950
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.942
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.942
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.942
SPL5 Oryza sativa OS02G0177300 I 0.942
29983.m003158 Ricinus communis 29983.m003158 I 0.935
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.934
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.933
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.932
MDP0000156994 Malus domestica MDP0000156994 I 0.930
MDP0000861601 Malus domestica MDP0000861601 I 0.930
TCM_029832 Theobroma cacao TCM_029832 I 0.929
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.928
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.924
Bo4g042390 Brassica oleracea Bo4g042390 I 0.923
Bra005470 Brassica rapa Bra005470 I 0.923
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.918
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.918
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.918
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.917
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.917
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.917
SPL3 Arabidopsis thaliana AT2G33810 D 0.915
Bo3g027460 Brassica oleracea Bo3g027460 I 0.915
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.914
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.912
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.912
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.910
Pm011381 Prunus mume Pm011381 I 0.910
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.909
F775_00761 Aegilops tauschii F775_00761 I 0.908
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.908
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.907
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.907
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.907
Ca_16243 Cicer arietinum Ca_16243 I 0.907
MDP0000158607 Malus domestica MDP0000158607 I 0.907
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.907
Cla023735 Citrullus lanatus Cla023735 I 0.906
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.905
MTR_2g078770 Medicago truncatula MTR_2g078770 I 0.904
mgf016414m Mimulus guttatus mgf016414m I 0.904
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.902
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.900
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.899
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.897
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.897
Bra022954 Brassica rapa Bra022954 I 0.894
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.894
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.893
GLYMA12G35460 Glycine max GLYMA12G35460 I 0.892
GLYMA13G35000 Glycine max GLYMA13G35000 I 0.892
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I 0.892
mgf017351m Mimulus guttatus mgf017351m I 0.891
Bo5g127310 Brassica oleracea Bo5g127310 I 0.890
Bra027265 Brassica rapa Bra027265 I 0.890
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.890
Ca_00320 Cicer arietinum Ca_00320 I 0.889
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.888
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.888
Ca_22526 Cicer arietinum Ca_22526 I 0.888
28211.m000132 Ricinus communis 28211.m000132 I 0.888
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.888
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.888
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.888
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.887
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I 0.886
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I 0.886
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.886
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.886
Traes_7BL_C4BA39104 Triticum aestivum Traes_7BL_C4BA39104 N 0.381