PGSC0003DMG400026027 (Solanum tuberosum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 PGSC0003DMG400026027 T322931_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.984 0.920
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.941 0.800
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.939 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400066955 SBP 166 240

Links

Other SBP family TFs
Other Solanum tuberosum TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.987
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.987
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.987
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.987
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.987
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.987
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.987
TCM_005622 Theobroma cacao TCM_005622 I 0.987
Ca_18942 Cicer arietinum Ca_18942 I 0.987
30174.m008803 Ricinus communis 30174.m008803 I 0.987
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.987
mgf016085m Mimulus guttatus mgf016085m I 0.987
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.987
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.987
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.987
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.987
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.987
PK25779.1 Cannabis sativa PK25779.1 I 0.987
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.986
Cla006776 Citrullus lanatus Cla006776 I 0.986
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.986
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.986
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.986
MDP0000803116 Malus domestica MDP0000803116 I 0.985
SPL8 Arabidopsis thaliana AT1G02065 D 0.984
Bo5g001290 Brassica oleracea Bo5g001290 I 0.984
Bo8g118210 Brassica oleracea Bo8g118210 I 0.984
Bra032662 Brassica rapa Bra032662 I 0.984
Bra033221 Brassica rapa Bra033221 I 0.984
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.984
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.984
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.984
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.984
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.984
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.984
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.984
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.984
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.983
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.981
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.979
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.978
Pm017777 Prunus mume Pm017777 I 0.978
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.977
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.961
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.959
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.959
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.957
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.956
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.955
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.950
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.950
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.950
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.948
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.946
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.942
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.941
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.939
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.939
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.938
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.938
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.938
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.932
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.932
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.932
SPL5 Oryza sativa OS02G0177300 I 0.932
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.930
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.930
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.930
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.929
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.926
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.926
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.926
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.926
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.926
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.926
OB04G34990 Oryza brachyantha OB04G34990 I 0.926
OBART04G27990 Oryza barthii OBART04G27990 I 0.926
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.926
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.926
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.926
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.926
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.926
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.926
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.926
SPL8 Oryza sativa OS04G0656500 I 0.926
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.926
Si017338m.g Setaria italica Si017338m.g I 0.926
Si022315m.g Setaria italica Si022315m.g I 0.926
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.926
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.926
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.926
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.924
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.921
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.919
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.914
OB02G15090 Oryza brachyantha OB02G15090 I 0.914
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.914
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.911
SPL10 Oryza indica BGIOSGA023408 I 0.910
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.910
MLOC_326 Hordeum vulgare MLOC_326 I 0.910
OB06G31100 Oryza brachyantha OB06G31100 I 0.910
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.910
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.910
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.910
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.910
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.910
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.910
SPL10 Oryza sativa OS06G0659100 I 0.910
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.910
Si006559m.g Setaria italica Si006559m.g I 0.910
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.910
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.910
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.910
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.906
Cla020006 Citrullus lanatus Cla020006 I 0.906
AMTR_s00106p00144050 Amborella trichopoda AMTR_s00106p00144050 I 0.905
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.903
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.902
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.902
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.902
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.901
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.896
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.887