Si017338m.g (Setaria italica)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Si017338m.g T323047_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.930 0.800
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.905 0.773
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.894 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si017338m SBP 191 265

Links

Other SBP family TFs
Other Setaria italica TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.984
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.980
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.980
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.980
SPL5 Oryza sativa OS02G0177300 I 0.980
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.979
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.979
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.979
SPL10 Oryza indica BGIOSGA023408 I 0.977
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.977
MLOC_326 Hordeum vulgare MLOC_326 I 0.977
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.977
OB06G31100 Oryza brachyantha OB06G31100 I 0.977
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.977
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.977
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.977
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.977
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.977
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.977
SPL10 Oryza sativa OS06G0659100 I 0.977
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.977
Si006559m.g Setaria italica Si006559m.g I 0.977
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.977
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.977
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.977
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.975
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.974
OB02G15090 Oryza brachyantha OB02G15090 I 0.974
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.973
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.971
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.969
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.969
OBART06G23500 Oryza barthii OBART06G23500 I 0.966
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.961
Traes_7DL_1957A97EC Triticum aestivum Traes_7DL_1957A97EC N 0.960
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.958
TRIUR3_10193 Triticum urartu TRIUR3_10193 I 0.958
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.952
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.952
MLOC_6525 Hordeum vulgare MLOC_6525 I 0.950
Cla020006 Citrullus lanatus Cla020006 I 0.949
F775_00761 Aegilops tauschii F775_00761 I 0.942
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.942
TRIUR3_34424 Triticum urartu TRIUR3_34424 N 0.941
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.939
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.939
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.938
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.936
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.936
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.935
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.934
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.933
SPL8 Arabidopsis thaliana AT1G02065 D 0.930
Bo5g001290 Brassica oleracea Bo5g001290 I 0.930
Bo8g118210 Brassica oleracea Bo8g118210 I 0.930
Bra032662 Brassica rapa Bra032662 I 0.930
Bra033221 Brassica rapa Bra033221 I 0.930
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.930
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.930
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.930
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.930
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.930
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.929
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.928
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.926
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.926
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.926
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.926
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.926
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.926
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.926
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.926
TCM_005622 Theobroma cacao TCM_005622 I 0.926
Ca_18942 Cicer arietinum Ca_18942 I 0.926
30174.m008803 Ricinus communis 30174.m008803 I 0.926
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.926
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.926
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.926
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.926
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.926
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.926
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.926
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.926
PK25779.1 Cannabis sativa PK25779.1 I 0.926
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.925
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.925
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.924
mgf016085m Mimulus guttatus mgf016085m I 0.924
MDP0000803116 Malus domestica MDP0000803116 I 0.924
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.923
Cla006776 Citrullus lanatus Cla006776 I 0.923
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.923
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.923
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.912
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.912
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.912
Ca_16243 Cicer arietinum Ca_16243 I 0.912
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.912
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.911
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.910
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.910
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.909
Pm011381 Prunus mume Pm011381 I 0.909
MDP0000158607 Malus domestica MDP0000158607 I 0.909
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.908
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.908
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.905
Cla023735 Citrullus lanatus Cla023735 I 0.904
MDP0000156994 Malus domestica MDP0000156994 I 0.903
MDP0000861601 Malus domestica MDP0000861601 I 0.903
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.902
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.901
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.899
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.899
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.899
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.899
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.899
OB04G34990 Oryza brachyantha OB04G34990 I 0.899
OBART04G27990 Oryza barthii OBART04G27990 I 0.899
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.899
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.899
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.899
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.899
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.899
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.899
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.899
SPL8 Oryza sativa OS04G0656500 I 0.899
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.899
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.899
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.899
Si022315m.g Setaria italica Si022315m.g I 0.899
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.899
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.899
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.899
TCM_029832 Theobroma cacao TCM_029832 I 0.898
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.896
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.896
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.894
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.892
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.892
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.890
Pm017777 Prunus mume Pm017777 I 0.890
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.890
Bo4g042390 Brassica oleracea Bo4g042390 I 0.889
Bra005470 Brassica rapa Bra005470 I 0.889
F775_20508 Aegilops tauschii F775_20508 N 0.888
Traes_7DL_2D8356B05 Triticum aestivum Traes_7DL_2D8356B05 N 0.888