Solyc02g077920.2 (Solanum lycopersicum)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Solyc02g077920.2 T323060_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL3
M07255_2.00 		Arabidopsis thaliana
NGTACGGA
TCCGTACN		 Dap-seq
OMalley et al.(2016)
SPL3_col_a 		0.916 0.773
SPL3
M07256_2.00 		Arabidopsis thaliana
NDNTGTACGGAHN
NDTCCGTACANHN		 Dap-seq
OMalley et al.(2016)
SPL3_colamp_a 		0.916 0.773
SPL3
M02715_2.00 		Arabidopsis thaliana
DDDDDNGTACGKHHHH
DDDDMCGTACNHHHHH		 SELEX
Mathelier et al.(2014)
MA0577.1 		0.916 0.773
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc02g077920.2.1 SBP 52 126

Links

Other SBP family TFs
Other Solanum lycopersicum TFs

120 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.965
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.960
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.958
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.953
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.952
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.946
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.945
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.945
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.943
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.939
Cla009788 Citrullus lanatus Cla009788 I 0.939
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.939
PK26639.1 Cannabis sativa PK26639.1 I 0.938
MDP0000156994 Malus domestica MDP0000156994 I 0.936
MDP0000861601 Malus domestica MDP0000861601 I 0.936
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.931
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.929
TCM_029832 Theobroma cacao TCM_029832 I 0.928
Bra021880 Brassica rapa Bra021880 I 0.927
Bo4g042390 Brassica oleracea Bo4g042390 I 0.923
Bra005470 Brassica rapa Bra005470 I 0.923
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N 0.923
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.922
mgf016414m Mimulus guttatus mgf016414m I 0.921
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.921
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.921
Si032170m.g Setaria italica Si032170m.g I 0.920
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.920
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.920
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.920
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I 0.920
OPUNC07G14360 Oryza punctata OPUNC07G14360 N 0.919
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.918
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.918
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.918
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.917
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.917
SPL3 Arabidopsis thaliana AT2G33810 D 0.916
Bo3g027460 Brassica oleracea Bo3g027460 I 0.916
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.916
Pm014154 Prunus mume Pm014154 I 0.916
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.914
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.914
Pm011381 Prunus mume Pm011381 I 0.914
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.914
MDP0000158607 Malus domestica MDP0000158607 I 0.914
mgf017351m Mimulus guttatus mgf017351m I 0.912
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.912
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.911
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.911
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.911
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.911
Ca_16243 Cicer arietinum Ca_16243 I 0.911
Cla023735 Citrullus lanatus Cla023735 I 0.911
MDP0000142582 Malus domestica MDP0000142582 N 0.911
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.911
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.908
MDP0000589558 Malus domestica MDP0000589558 I 0.907
MDP0000865739 Malus domestica MDP0000865739 I 0.907
Ca_24655 Cicer arietinum Ca_24655 I 0.905
29983.m003158 Ricinus communis 29983.m003158 I 0.905
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.905
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.905
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.905
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.904
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.903
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.903
OBART07G15570 Oryza barthii OBART07G15570 I 0.903
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.903
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.903
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.903
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.903
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.902
OB04G27960 Oryza brachyantha OB04G27960 I 0.902
mgf001295m Mimulus guttatus mgf001295m I 0.902
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.902
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.901
OBART04G20940 Oryza barthii OBART04G20940 I 0.901
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.901
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.901
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.901
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.901
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.901
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.901
SPL7 Oryza sativa OS04G0551500 I 0.901
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.900
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I 0.899
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I 0.899
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.897
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.897
Aquca_036_00099 Aquilegia coerulea Aquca_036_00099 N 0.897
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.895
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.895
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.895
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.894
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.894
Pm010075 Prunus mume Pm010075 I 0.894
30174.m008805 Ricinus communis 30174.m008805 I 0.894
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.894
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.894
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.893
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.893
Bra038324 Brassica rapa Bra038324 I 0.892
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.892
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.891
Cla002263 Citrullus lanatus Cla002263 I 0.891
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.891
mgf001202m Mimulus guttatus mgf001202m I 0.890
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.890
Bo2g062840 Brassica oleracea Bo2g062840 I 0.889
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.889
TCM_005620 Theobroma cacao TCM_005620 I 0.889
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.889
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.888
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.888
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.888
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.888
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I 0.887
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.886
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.886